Hg_chrom8_TN10mRNA_16444
Organism: Heterodera glycines Gene Locus: chr8:8830754-8837892 Feature type: polypeptideProtein Sequence
Length: 706
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 0.955 | 0.979 | 0.928 | 0.85 | 1.344 | 0.438 | 1.275 | 0.755 | 1.378 | 0.579 | 1.0 | 1.692 | 1.226 | 1.359 | 1.558 | 0.697 | 0.987 | 0.981 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15539
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRKNPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.234
|
0.782
|
0.019
|
0.314
|
0.054
|
0.053
|
0.115
|
0.071
|
0.071
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012360
|
1.000
|
1.000
|
Hsc_gene_22362.t1
|
Hsc_gene_22361.t1
|
— |
Q8DKR7.2 Chaperone protein DnaJ [Thermosynechococcus vestitus BP-1]
|
KAH7730501.1 Protein F43H9.3 [Aphelenchus avenae]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.868|GO:0110165_0.868|GO:0008150_0.857|GO:0005622_0.785|GO:0016020_0.767|GO:0009987_0.732|GO:0043226_0.703|GO:0043229_0.701|GO:0005737_0.691|GO:0043227_0.680|GO:0043231_0.657|GO:0003674_0.628|GO:0005488_0.545|GO:0065007_0.523|GO:0050896_0.502
|
IPR001623+2-59_3-56_3-64_3-67_5-23_23-38_39-59+|IPR007872+102-140+|IPR036671+98-144_102-141+|IPR036869+1-76_2-67+|IPR043519+277-443_308-444+
|
SM00271+2-59+
|
PF00226+3-64+DnaJ_domain|PF05207+102-140+CSL_zinc_finger
|
— |
PTHR12271+235-651+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
646-706
|
1.000
|
1-645
|
3apq_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
79156.940
|
7.421
|
9.000
|
23.513
|
11.756
|
48.017
|
51.983
|
13.031
|
10.482
|
52.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
918.525
|
740.091
|
538.794
|
953.735
|
1206.700
|
787.741
|
1248.925
|
337.750
|
230.457
|
1665.551
|
1050.511
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.689
|
0.229
|
0.933
|
0.307
|
-0.601
|
0.676
|
-1.327
|
2.029
|
— | — | — | — | — |
No JSON data available for plots.