Hg_chrom8_TN10mRNA_16447
Organism: Heterodera glycines Gene Locus: chr8:8864631-8866787 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.228 | 0.901 | 1.216 | 0.607 | 0.704 | 1.354 | 1.174 | 1.056 | 1.643 | 1.142 | 1.174 | 1.243 | 0.88 | 0.406 | 0.719 | 0.654 | 0.981 | 0.907 | 0.271 | 1.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15542
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.427
|
0.303
|
0.045
|
0.718
|
0.163
|
0.130
|
0.061
|
0.032
|
0.121
|
0.273
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004853
|
2.000
|
1.000
|
Hsc_gene_9341.t1
|
Hsc_gene_9341.t1
|
— |
Q3SZD7.1 Carbonyl reductase [NADPH] 1 [Bos taurus]
|
KAH7712535.1 oxidoreductaseshort chain dehydrogenase/reductase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.784|GO:0008150_0.742|GO:0003824_0.708|GO:0005575_0.676|GO:0110165_0.664|GO:0016491_0.600|GO:0008152_0.574|GO:0009987_0.550|GO:0016614_0.519|GO:0016616_0.519|GO:0005622_0.506
|
IPR002347+4-153_5-22_86-97_137-145_200-244_204-223_225-242+|IPR036291+3-268+
|
— |
PF00106+4-153_200-244+short_chain_dehydrogenase
|
— |
PTHR43963+4-282+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
30848.250
|
7.700
|
4.000
|
24.296
|
9.859
|
44.014
|
55.986
|
13.380
|
10.915
|
51.408
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1909.636
|
445.510
|
2057.780
|
1033.712
|
1243.157
|
1462.102
|
2485.144
|
4500.338
|
2450.236
|
1556.576
|
1939.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.979
|
1.077
|
-0.885
|
0.235
|
0.248
|
0.775
|
1.523
|
-0.717
|
— | — | — | — | — |
No JSON data available for plots.