Hg_chrom8_TN10mRNA_16450
Organism: Heterodera glycines Gene Locus: chr8:8867866-8879392 Feature type: polypeptideProtein Sequence
Length: 1,108
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 0.882 | 0.87 | 0.716 | 1.128 | 2.291 | 0.655 | 1.805 | 0.582 | 1.342 | 0.465 | 1.327 | 1.003 | 0.816 | 1.326 | 1.019 | 1.006 | 1.135 | 0.903 | 0.504 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15545
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.612
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRRR,RRQPVPTTLPVEAKKFDR,RRAVVLQHSVWLEREQRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.204
|
0.213
|
0.015
|
0.646
|
0.126
|
0.420
|
0.246
|
0.012
|
0.371
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012363
|
1.000
|
1.000
|
Hsc_gene_9339.t1
|
Hsc_gene_9339.t1
|
— | — |
KAI1724993.1 PH domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001849+852-972_853-974+|IPR004012+69-192+|IPR011993+852-979+|IPR037213+73-187+|IPR053015+78-382+
|
SM00233+853-974+
|
— | — |
PTHR46556+78-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
230-475;693-842
|
3.000
|
1-229;476-692;843-1108
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.495
|
124007.630
|
6.423
|
-2.000
|
24.729
|
10.108
|
50.722
|
49.278
|
13.177
|
11.552
|
49.819
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1324.712
|
2686.275
|
790.442
|
919.539
|
982.417
|
1140.901
|
1227.199
|
709.073
|
634.023
|
2149.156
|
1499.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.994
|
-1.684
|
0.327
|
— |
0.231
|
— |
-0.795
|
0.934
|
— | — | — | — | — |
No JSON data available for plots.