Hg_chrom8_TN10mRNA_16454
Organism: Heterodera glycines Gene Locus: chr8:8896726-8899100 Feature type: polypeptideProtein Sequence
Length: 530
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 0.746 | 0.858 | 0.911 | 0.943 | 1.113 | 0.786 | 0.377 | 1.132 | 1.122 | 1.201 | 2.22 | 1.73 | 0.726 | 1.155 | 0.701 | 1.114 | 1.458 | 1.161 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15548
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.872
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.432
|
0.291
|
0.086
|
0.712
|
0.072
|
0.032
|
0.132
|
0.013
|
0.075
|
0.357
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001442
|
4.000
|
1.000
|
Hsc_gene_22336.t1
|
— | — |
P29691.4 Elongation factor 2 [Caenorhabditis elegans]
|
KAI1707051.1 elongation factor tu GTP binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.350
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0008150_0.813|GO:0005575_0.768|GO:0110165_0.766|GO:0009987_0.683|GO:0005622_0.609|GO:0003674_0.584|GO:0005737_0.538
|
IPR000795+151-244+|IPR009000+357-416+|IPR027417+31-64_70-141_76-356_148-257+|IPR031157+100-115+|IPR035647+473-529+
|
— |
PF00009+151-244+Elongation_factor_Tu_GTP_binding_domain
|
— |
PTHR42908+70-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-530
|
6gz5_Ct
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
59647.760
|
9.446
|
19.000
|
24.717
|
10.189
|
43.962
|
56.038
|
14.340
|
10.377
|
49.057
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
204.553
|
121.955
|
182.090
|
195.178
|
385.192
|
249.860
|
827.612
|
265.296
|
71.475
|
6.118
|
34.128
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.345
|
0.542
|
— |
0.949
|
-0.611
|
1.740
|
— |
1.786
|
3.813
|
— |
6.587
|
— | — |
No JSON data available for plots.