Hg_chrom8_TN10mRNA_16457
Organism: Heterodera glycines Gene Locus: chr8:8902200-8903460 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 1.817 | 0.379 | 1.078 | 0.694 | 0.801 | 1.054 | 1.042 | 1.273 | 1.056 | 0.552 | 1.532 | 0.289 | 1.302 | 1.701 | 0.818 | 1.366 | 0.947 | 2.404 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15551
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.644
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.311
|
0.689
|
0.208
|
0.544
|
0.308
|
0.018
|
0.084
|
0.154
|
0.145
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002357
|
3.000
|
1.000
|
Hsc_gene_22330.t1
|
Hsc_gene_22330.t1
|
— |
Q5T653.2 Large ribosomal subunit protein uL2m [Homo sapiens]
|
KAK6037263.1 Ribosomal Proteins L2, RNA binding domain protein, partial [Cooperia oncophora]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.891|GO:0110165_0.881|GO:0016020_0.781|GO:0005622_0.767|GO:0043226_0.740|GO:0005737_0.726|GO:0043229_0.723|GO:0043227_0.706|GO:0043231_0.706|GO:0031090_0.579|GO:0031967_0.561|GO:0005739_0.560|GO:0005740_0.552|GO:0031966_0.552|GO:0005743_0.548|GO:0019866_0.548|GO:0003674_0.520
|
IPR012340+5-59_16-64+|IPR014722+61-107+|IPR022666+14-58+
|
— |
PF00181+14-58+Ribosomal_Proteins_L2,_RNA_binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;190-192
|
1.000
|
25-189
|
9uwh_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
21210.330
|
10.275
|
13.000
|
20.312
|
8.333
|
45.312
|
54.688
|
14.062
|
6.250
|
56.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
275.855
|
915.022
|
433.123
|
254.475
|
268.740
|
199.928
|
288.642
|
426.063
|
103.784
|
84.281
|
92.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.310
|
-1.984
|
-0.658
|
— |
-0.412
|
0.539
|
0.986
|
-0.419
|
— | — | — | — | — |
No JSON data available for plots.