Hg_chrom8_TN10mRNA_16460
Organism: Heterodera glycines Gene Locus: chr8:8907435-8909116 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.385 | 0.84 | 0.985 | 1.12 | 1.203 | 1.018 | 0.731 | 0.181 | 0.882 | 1.512 | 0.875 | 2.548 | 1.404 | 0.486 | 1.326 | 0.825 | 0.769 | 0.711 | 1.111 | 0.637 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15554
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
23-45
|
0.953
|
— | — | — | — |
0.000
|
— | — |
0.455
|
0.304
|
0.024
|
0.671
|
0.331
|
0.161
|
0.539
|
0.007
|
0.015
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004855
|
2.000
|
1.000
|
Hsc_gene_22345.t1
|
Hsc_gene_22345.t1
|
— |
Q5ZIK9.1 Coatomer subunit epsilon [Gallus gallus]
|
KAI1724148.1 coatomer epsilon subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005198|GO:0005515|GO:0006890
|
GO:0005575_0.917|GO:0110165_0.909|GO:0016020_0.848|GO:0005622_0.838|GO:0043226_0.792|GO:0005737_0.791|GO:0043229_0.774|GO:0043227_0.747|GO:0043231_0.721|GO:0008150_0.555|GO:0009987_0.505
|
IPR006822+41-271_45-268+|IPR011990+40-272_145-266+
|
— |
PF04733+45-268+Coatomer_epsilon_subunit
|
— |
PTHR10805+45-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
30907.710
|
6.051
|
-0.500
|
25.271
|
9.025
|
43.321
|
56.679
|
12.635
|
12.635
|
48.014
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
179.003
|
282.203
|
229.123
|
165.133
|
114.169
|
106.153
|
103.971
|
200.895
|
23.621
|
314.804
|
190.011
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.529
|
-0.910
|
-0.364
|
-0.566
|
— | — |
0.815
|
-0.807
|
— | — | — | — | — |
No JSON data available for plots.