Hg_chrom8_TN10mRNA_16462
Organism: Heterodera glycines Gene Locus: chr8:8914763-8916642 Feature type: polypeptideProtein Sequence
Length: 151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 0.462 | 1.325 | 0.228 | 0.883 | 1.868 | 0.631 | 0.993 | 1.177 | 1.074 | 1.003 | 3.116 | 0.92 | 0.891 | 1.216 | 0.851 | 1.086 | 1.405 | 1.019 | 0.779 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15556
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
64-84
|
0.940
|
— | — | — | — |
0.000
|
— | — |
0.311
|
0.390
|
0.029
|
0.678
|
0.195
|
0.378
|
0.182
|
0.040
|
0.199
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012366
|
1.000
|
1.000
|
Hsc_gene_22355.t1
|
Hsc_gene_22355.t1
|
— |
Q23536.1 Protein lgg-2 [Caenorhabditis elegans]
|
KAI1725047.1 autophagy protein atg8 ubiquitin like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.854|GO:0110165_0.848|GO:0005622_0.799|GO:0016020_0.749|GO:0008150_0.715|GO:0043226_0.707|GO:0043229_0.696|GO:0005737_0.695|GO:0009987_0.662|GO:0043227_0.655|GO:0043231_0.632|GO:0008152_0.525
|
IPR004241+13-122_23-122+|IPR029071+12-122+
|
— |
PF02991+23-122+Autophagy_protein_Atg8_ubiquitin_like
|
G3DSA:3.10.20.90:FF:000149+5-124+microtubule-associated_proteins_1A/1B_light_chain_3C
|
PTHR10969+13-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
132-151
|
1.000
|
1-131
|
5azh_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
17231.870
|
7.277
|
1.500
|
27.152
|
9.272
|
49.007
|
50.993
|
14.570
|
12.583
|
47.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1392.553
|
2017.959
|
1732.683
|
1312.868
|
670.960
|
1261.131
|
629.700
|
4940.928
|
1203.994
|
477.089
|
788.620
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.449
|
-0.757
|
-0.292
|
-1.000
|
0.925
|
-0.992
|
1.864
|
-2.830
|
— | — | — | — | — |
No JSON data available for plots.