Hg_chrom8_TN10mRNA_16463
Organism: Heterodera glycines Gene Locus: chr8:8928948-8929660 Feature type: polypeptideProtein Sequence
Length: 76
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.377 | 0.0 | 0.239 | 0.454 | 1.316 | 1.012 | 0.47 | 2.632 | 1.754 | 1.422 | 0.997 | 2.322 | 0.365 | 1.012 | 1.88 | 0.752 | 1.294 | 0.598 | 0.0 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15557
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.654
|
0.123
|
0.002
|
0.390
|
0.062
|
0.031
|
0.118
|
0.007
|
0.088
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012367
|
1.000
|
1.000
|
Hsc_gene_22352.t1
|
Hsc_gene_22352.t1
|
— |
Q16559.1 T-cell acute lymphocytic leukemia protein 2 [Homo sapiens]
|
KAI1727903.1 helix-loop-helix DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.889|GO:0005575_0.765|GO:0110165_0.736|GO:0009987_0.723|GO:0065007_0.677|GO:0050789_0.665|GO:0003674_0.639|GO:0005488_0.639|GO:0032501_0.635|GO:0032502_0.633|GO:0050794_0.633|GO:0005622_0.630|GO:0048856_0.630|GO:0043226_0.588|GO:0043229_0.583|GO:0016020_0.550|GO:0048518_0.512
|
IPR011598+6-58_19-64_22-58+|IPR036638+19-71_22-67+|IPR050283+21-63+
|
SM00353+19-64+
|
PF00010+22-58+Helix-loop-helix_DNA-binding_domain
|
— |
PTHR23349+21-63+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10
|
1.000
|
11-76
|
2ypb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
8581.090
|
10.457
|
7.000
|
30.263
|
9.211
|
47.368
|
52.632
|
21.053
|
9.211
|
40.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
28.164
|
66.986
|
63.398
|
36.984
|
14.069
|
16.492
|
63.390
|
36.857
|
15.203
|
0.000
|
6.516
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.995
|
-0.668
|
-1.435
|
— |
1.951
|
1.061
|
0.924
|
— | — | — | — | — |
No JSON data available for plots.