SCN Proteipedia

Hg_chrom8_TN10mRNA_16464

Organism: Heterodera glycines Gene Locus: chr8:8929955-8935406 Feature type: polypeptide

Protein Sequence

Length: 620

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.2	0.713	1.144	0.667	1.156	1.241	0.787	0.887	1.147	1.242	0.538	2.182	1.03	0.62	1.975	0.922	0.714	1.075	0.372	0.474	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15558	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK,RRRWAMEQARQMPHGRRKR,RRWAMEQARQMPHGRRKRQ	84-105	0.987	—	—	—	—	0.000	—	—	0.875	0.090	0.007	0.242	0.027	0.088	0.054	0.007	0.032	0.102

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004856	2.000	1.000	Hsc_gene_22351.t1	Hsc_gene_22351.t1	—	Q9C106.1 DNA-directed RNA polymerase III subunit rpc3 [Schizosaccharomyces pombe 972h-]	KAI1725049.1 RNA polymerase III subunit RPC82 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003697\|GO:0005666\|GO:0006351	GO:0005575_0.907\|GO:0110165_0.901\|GO:0005622_0.817\|GO:0016020_0.811\|GO:0008150_0.795\|GO:0043226_0.752\|GO:0009987_0.744\|GO:0043229_0.729\|GO:0003674_0.715\|GO:0043227_0.691\|GO:0065007_0.677\|GO:0043231_0.668\|GO:0050789_0.666\|GO:0005488_0.659\|GO:0050794_0.643\|GO:0032501_0.631\|GO:0050896_0.627\|GO:0008152_0.625\|GO:0044238_0.611\|GO:0005737_0.605\|GO:0005634_0.604\|GO:0044237_0.603\|GO:0009058_0.599\|GO:0043170_0.593\|GO:0003824_0.588\|GO:0044249_0.579\|GO:0048518_0.576\|GO:0009059_0.572\|GO:0019222_0.569\|GO:0048522_0.568\|GO:0006139_0.563\|GO:0010467_0.563\|GO:0031323_0.562\|GO:0006950_0.558\|GO:0060255_0.557\|GO:0080090_0.557\|GO:0034654_0.552\|GO:0090304_0.551\|GO:0097159_0.549\|GO:0009889_0.548\|GO:0031326_0.548\|GO:0141187_0.547\|GO:0009893_0.545\|GO:0016070_0.545\|GO:0048583_0.545\|GO:0010468_0.544\|GO:0010556_0.544\|GO:0051239_0.544\|GO:0032774_0.542\|GO:0010604_0.541\|GO:0031325_0.541\|GO:0016740_0.540\|GO:0044419_0.537\|GO:0032991_0.536\|GO:0009891_0.535\|GO:0019219_0.535\|GO:0031328_0.535\|GO:0009605_0.534\|GO:0051252_0.532\|GO:0003676_0.531\|GO:0006351_0.531\|GO:0009607_0.531\|GO:0010557_0.531\|GO:0043207_0.531\|GO:0048584_0.531\|GO:0051707_0.531\|GO:0002376_0.529\|GO:0006355_0.529\|GO:2001141_0.529\|GO:0051240_0.528\|GO:0010628_0.527\|GO:0006952_0.526\|GO:0098542_0.526\|GO:0080134_0.525\|GO:0002682_0.522\|GO:0002684_0.522\|GO:0006955_0.522\|GO:0031347_0.522\|GO:0045087_0.522\|GO:0140546_0.522\|GO:0031349_0.521\|GO:0032101_0.521\|GO:0032103_0.521\|GO:0050776_0.521\|GO:0050778_0.521\|GO:0001816_0.520\|GO:0001817_0.520\|GO:0002831_0.520\|GO:0002833_0.520\|GO:0001819_0.516\|GO:0006359_0.516\|GO:0006383_0.516\|GO:0032479_0.516\|GO:0032481_0.516\|GO:0032606_0.516\|GO:0032608_0.516\|GO:0032648_0.516\|GO:0032728_0.516\|GO:0045088_0.516\|GO:0045089_0.516\|GO:0016772_0.513\|GO:0140640_0.511\|GO:0003677_0.510\|GO:0140098_0.507\|GO:0016779_0.505\|GO:0003697_0.501\|GO:0003899_0.501\|GO:0034062_0.501\|GO:0097747_0.501	IPR008806+247-380+\|IPR013197+7-66+\|IPR036388+1-80_83-165_259-375_377-465+\|IPR039748+5-570+	—	PF05645+247-380+RNA_polymerase_III_subunit_RPC82\|PF08221+7-66+RNA_polymerase_III_subunit_RPC82_helix-turn-helix_domain\|PF22536+388-464+POLR3C,_C-terminal_winged-helix_domain	—	PTHR12949+5-570+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	190-251;579-620	2.000	1-189;252-578	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.595	69077.010	7.382	5.500	28.226	7.581	46.935	53.065	15.000	13.226	49.355

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	1918.194	758.799	531.368	788.936	862.329	642.222	920.976	398.216	355.207	6287.127	3744.876

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.744	—	0.679	—	-0.411	0.531	-0.793	1.352	—	—	—	—	—

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