Hg_chrom8_TN10mRNA_16468
Organism: Heterodera glycines Gene Locus: chr8:8946297-8948680 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.603 | 0.517 | 0.539 | 0.639 | 0.432 | 1.33 | 1.587 | 0.926 | 0.988 | 1.702 | 0.224 | 1.743 | 2.675 | 0.997 | 0.983 | 0.582 | 0.729 | 0.786 | 2.849 | 1.852 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15561
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.166
|
0.236
|
0.020
|
0.210
|
0.881
|
0.209
|
0.522
|
0.013
|
0.110
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012370
|
1.000
|
1.000
|
Hsc_gene_22347.t1
|
Hsc_gene_22347.t1
|
— |
Q5R9W3.1 Derlin-1 [Pongo abelii]
|
KAF7639659.1 Derlin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.889|GO:0005575_0.845|GO:0110165_0.845|GO:0009987_0.839|GO:0071944_0.831|GO:0005886_0.818|GO:0016020_0.818|GO:0050896_0.748|GO:0005622_0.672|GO:0005737_0.672|GO:0006950_0.654|GO:0005773_0.620|GO:0043226_0.620|GO:0043227_0.620|GO:0043229_0.620|GO:0043231_0.620|GO:0051716_0.593|GO:0012505_0.592|GO:0006810_0.589|GO:0051179_0.589|GO:0051234_0.589|GO:0005783_0.521|GO:0033554_0.507
|
IPR007599+11-204+|IPR035952+9-189+
|
— |
PF04511+11-204+Der1-like_family
|
— |
PTHR11009+6-251+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
253-270
|
1.000
|
1-252
|
7czb_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
30750.690
|
8.017
|
4.500
|
13.704
|
21.481
|
29.630
|
70.370
|
8.148
|
5.556
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2083.720
|
1520.724
|
1304.869
|
2233.308
|
2976.221
|
3671.198
|
1992.520
|
1977.056
|
1438.212
|
2159.155
|
1850.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.449
|
0.417
|
0.883
|
0.382
|
0.318
|
-0.873
|
-0.993
|
— | — | — | — | — | — |
No JSON data available for plots.