Hg_chrom8_TN10mRNA_16470
Organism: Heterodera glycines Gene Locus: chr8:8955086-8957224 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.476 | 0.894 | 1.119 | 0.663 | 1.41 | 1.282 | 0.504 | 0.577 | 0.94 | 1.663 | 1.107 | 3.167 | 0.962 | 0.444 | 1.02 | 0.549 | 0.694 | 0.699 | 0.592 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15563
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.588
|
0.107
|
0.058
|
0.465
|
0.208
|
0.240
|
0.181
|
0.022
|
0.127
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004855
|
2.000
|
1.000
|
Hsc_gene_22345.t1
|
Hsc_gene_22345.t1
|
— |
Q5ZIK9.1 Coatomer subunit epsilon [Gallus gallus]
|
KAI1724148.1 coatomer epsilon subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005198|GO:0005515|GO:0006890
|
GO:0005575_0.903|GO:0110165_0.893|GO:0005622_0.854|GO:0016020_0.816|GO:0005737_0.797|GO:0043226_0.783|GO:0043229_0.771|GO:0043227_0.742|GO:0043231_0.711|GO:0008150_0.554|GO:0009987_0.506
|
IPR006822+1-260_3-258+|IPR011990+1-260_85-230+
|
— |
PF04733+2-258+Coatomer_epsilon_subunit
|
— |
PTHR10805+3-258+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-260
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
29332.950
|
5.079
|
-4.500
|
28.077
|
8.462
|
45.000
|
55.000
|
13.462
|
14.615
|
43.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
violet
|
824.674
|
489.133
|
668.503
|
857.705
|
1027.573
|
1201.998
|
965.312
|
993.810
|
808.906
|
674.759
|
732.250
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.223
|
0.673
|
0.467
|
0.229
|
0.241
|
-0.306
|
-0.380
|
— | — | — | — | — | — |
No JSON data available for plots.