Hg_chrom8_TN10mRNA_16471
Organism: Heterodera glycines Gene Locus: chr8:8957303-8959875 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.459 | 0.648 | 1.14 | 1.442 | 0.755 | 1.608 | 0.996 | 0.871 | 1.161 | 1.46 | 0.264 | 1.435 | 0.484 | 0.737 | 1.067 | 1.095 | 0.914 | 1.161 | 0.268 | 0.307 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15564
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.384
|
0.422
|
0.009
|
0.445
|
0.065
|
0.173
|
0.124
|
0.074
|
0.045
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004460
|
2.000
|
1.000
|
Hsc_gene_22344.t1
|
Hsc_gene_22344.t1
|
— |
Q9SP08.1 Exosome complex component RRP41 homolog [Arabidopsis thaliana]
|
KAH7729566.1 3' exoribonuclease familydomain 1 containing protein [Aphelenchus avenae]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.804|GO:0009987_0.747|GO:0005575_0.742|GO:0110165_0.733|GO:0008152_0.633|GO:0016020_0.627|GO:0044237_0.611|GO:0044238_0.603|GO:0005622_0.599|GO:0009058_0.596|GO:0043170_0.587|GO:0044249_0.579|GO:0009059_0.568|GO:0005737_0.567|GO:0010467_0.567|GO:0006139_0.562|GO:0090304_0.551|GO:0043226_0.532|GO:0043227_0.506|GO:0043229_0.504
|
IPR001247+76-185+|IPR020568+52-214+|IPR027408+56-285+|IPR050080+53-281+
|
— |
PF01138+76-185+3'_exoribonuclease_family,_domain_1
|
— |
PTHR11953+53-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
30140.340
|
4.612
|
-8.500
|
19.512
|
4.878
|
41.812
|
58.188
|
8.711
|
10.801
|
58.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightgreen
|
547.628
|
751.275
|
652.716
|
758.623
|
731.946
|
560.960
|
569.576
|
468.324
|
328.380
|
464.556
|
406.195
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.432
|
-0.123
|
0.325
|
— |
-0.369
|
— |
-0.366
|
0.425
|
— | — | — | — | — |
No JSON data available for plots.