Hg_chrom8_TN10mRNA_16473
Organism: Heterodera glycines Gene Locus: chr8:8962541-8963870 Feature type: polypeptideProtein Sequence
Length: 230
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 1.213 | 0.632 | 0.6 | 1.304 | 1.115 | 0.932 | 1.957 | 0.966 | 1.704 | 0.593 | 1.535 | 0.483 | 0.334 | 1.065 | 1.242 | 0.855 | 1.318 | 0.669 | 0.767 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15566
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.479
|
0.591
|
0.039
|
0.694
|
0.083
|
0.104
|
0.146
|
0.214
|
0.048
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001845
|
2.000
|
2.000
|
Hsc_gene_22329.t1;Hsc_gene_22342.t1
|
— | — |
Q3T0G5.1 Pyridoxal phosphate homeostasis protein [Bos taurus]
|
KAF7639336.1 Ala_racemase_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030170
|
GO:0005575_0.794|GO:0110165_0.788|GO:0005622_0.730|GO:0005737_0.694
|
IPR001608+23-218+|IPR011078+5-113_8-217_111-224_112-221+|IPR029066+2-112_7-216_113-226+
|
— |
PF01168+23-218+Alanine_racemase,_N-terminal_domain
|
— |
PTHR10146+112-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-230
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
25289.780
|
6.404
|
-0.500
|
24.348
|
9.130
|
47.826
|
52.174
|
13.043
|
11.304
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1784.342
|
1958.992
|
1539.871
|
1434.862
|
1440.800
|
1405.316
|
1467.941
|
1517.872
|
1106.911
|
2939.192
|
2153.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.577
|
-0.586
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.