Hg_chrom8_TN10mRNA_16476
Organism: Heterodera glycines Gene Locus: chr8:8969380-8971079 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.443 | 0.796 | 1.384 | 0.912 | 0.561 | 0.652 | 1.642 | 1.054 | 1.381 | 0.442 | 1.288 | 1.622 | 1.263 | 1.192 | 1.043 | 1.316 | 1.051 | 0.281 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15569
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR
|
21-41
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.374
|
0.192
|
0.014
|
0.761
|
0.123
|
0.051
|
0.214
|
0.038
|
0.051
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012372
|
1.000
|
1.000
|
Hsc_gene_22331.t1
|
Hsc_gene_22331.t1;Hsc_gene_22331.t2
|
— | — |
KAF7639338.1 SRR1 domain-containing protein [Meloidogyne graminicola]
|
CAA3008028
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012942+102-265+|IPR040044+95-215+
|
— |
PF07985+102-265+SRR1_domain
|
— |
PTHR28626+95-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-274
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
30382.770
|
6.740
|
1.500
|
21.898
|
11.314
|
45.620
|
54.380
|
12.044
|
9.854
|
55.109
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
363.981
|
137.569
|
209.731
|
196.066
|
232.756
|
233.065
|
338.885
|
298.756
|
642.518
|
492.967
|
557.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.377
|
0.374
|
— |
0.215
|
— |
0.551
|
— |
0.326
|
— | — | — | — | — |
No JSON data available for plots.