SCN Proteipedia

Hg_chrom8_TN10mRNA_16479

Organism: Heterodera glycines Gene Locus: chr8:8977653-8979337 Feature type: polypeptide

Protein Sequence

Length: 358

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.877	0.78	1.016	0.0	1.443	1.074	0.432	1.816	0.186	0.755	1.566	2.3	0.621	0.645	3.021	1.756	0.778	0.635	0.43	0.164	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15572	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKLTAEELEERRRAM,RRRSSAGSSRRRRSRDRSR,KAQRVLRKAFEKELKKAVKKKSSKRKKRKRSSSPSSSSSSSSPERRKEEQKRRRHHHHHHRRSEGRKSGDSEREGRAKRSSRSSSRTERHRRRRSSAGSSRRRRSRDRS	—	—	—	—	—	—	0.000	—	—	0.856	0.105	0.006	0.057	0.015	0.029	0.088	0.070	0.065	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012375	1.000	1.000	Hsc_gene_22334.t1	—	—	Q9NXE8.1 Pre-mRNA-splicing factor CWC25 homolog [Homo sapiens]	KAI1711770.1 pre-mRNA splicing factor domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.950\|GO:0110165_0.950\|GO:0008150_0.942\|GO:0005622_0.934\|GO:0009987_0.918\|GO:0043226_0.918\|GO:0043229_0.915\|GO:0016020_0.900\|GO:0006139_0.886\|GO:0008152_0.886\|GO:0043170_0.886\|GO:0044238_0.886\|GO:0090304_0.886\|GO:0005634_0.883\|GO:0043227_0.883\|GO:0043231_0.883\|GO:0009058_0.881\|GO:0009059_0.881\|GO:0010467_0.881\|GO:0044237_0.881\|GO:0044249_0.881\|GO:0034654_0.880\|GO:0141187_0.880\|GO:0016070_0.876\|GO:0032774_0.866\|GO:0031974_0.783\|GO:0031981_0.783\|GO:0043233_0.783\|GO:0070013_0.783\|GO:0032991_0.759\|GO:0006396_0.736\|GO:0016071_0.722\|GO:0006397_0.716\|GO:0000375_0.709\|GO:0000377_0.709\|GO:0008380_0.709\|GO:0000398_0.708\|GO:0005654_0.694\|GO:0140513_0.638\|GO:1990904_0.624\|GO:0016604_0.573\|GO:1902494_0.572\|GO:0120114_0.562\|GO:0030532_0.558\|GO:0005681_0.557\|GO:0097525_0.557\|GO:0016607_0.554\|GO:0005682_0.552\|GO:0005686_0.545\|GO:0000974_0.540\|GO:0005684_0.540\|GO:0005688_0.540\|GO:0071006_0.540\|GO:0071012_0.540\|GO:0120115_0.540	IPR022209+16-119+\|IPR051376+17-358+	—	PF12542+16-119+Pre-mRNA_splicing_factor	—	PTHR16196+17-358+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-358	0.000	—	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.634	41595.760	11.519	45.500	43.017	6.983	67.598	32.402	28.771	14.246	44.693

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	738.156	953.210	501.597	499.476	684.972	528.005	993.345	555.929	778.787	876.641	834.703

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.157	-1.069	—	0.423	-0.361	0.923	—	0.981	—	—	—	—	—

No JSON data available for plots.

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