Hg_chrom8_TN10mRNA_16480
Organism: Heterodera glycines Gene Locus: chr8:8979446-8984984 Feature type: polypeptideProtein Sequence
Length: 870
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.35 | 0.989 | 0.94 | 0.872 | 1.13 | 1.621 | 0.397 | 0.747 | 1.456 | 1.538 | 0.61 | 1.352 | 0.639 | 0.774 | 0.868 | 1.1 | 0.867 | 1.097 | 0.796 | 0.71 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15573
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
46-70
|
0.983
|
— | — |
0.000
|
— | — |
0.691
|
0.111
|
0.012
|
0.616
|
0.161
|
0.125
|
0.130
|
0.112
|
0.185
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012376
|
1.000
|
1.000
|
Hsc_gene_22335.t1
|
Hsc_gene_22335.t1
|
— |
Q14974.2 Importin subunit beta-1 [Homo sapiens]
|
KAF7639313.1 Importin N-terminal domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006606|GO:0006886|GO:0031267
|
GO:0005575_0.910|GO:0110165_0.902|GO:0005622_0.818|GO:0005737_0.763|GO:0008150_0.679|GO:0043226_0.658|GO:0043229_0.635|GO:0016020_0.629|GO:0009987_0.625|GO:0003674_0.536|GO:0071944_0.531|GO:0043227_0.525|GO:0005886_0.514|GO:0043231_0.507|GO:0051179_0.503
|
IPR001494+22-102_24-102+|IPR011989+1-869+|IPR016024+3-826+|IPR040122+1-831+
|
SM00913+22-102+
|
PF03810+24-102+Importin-beta_N-terminal_domain|PF13513+378-433+HEAT-like_repeat
|
G3DSA:1.25.10.10:FF:000027+2-865+Importin_subunit_beta-1
|
PTHR10527+1-831+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-870
|
1m5n_S
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
95686.610
|
4.668
|
-25.500
|
21.724
|
7.241
|
45.287
|
54.713
|
9.770
|
11.954
|
51.149
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.