SCN Proteipedia

Hg_chrom8_TN10mRNA_16481

Organism: Heterodera glycines Gene Locus: chr8:8986647-8990433 Feature type: polypeptide

Protein Sequence

Length: 852

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.764	0.873	1.195	0.567	1.193	0.933	0.95	0.939	1.382	1.047	1.138	2.14	1.272	0.948	1.078	0.57	0.885	1.298	0.632	0.621	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15574	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.741

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	RKRK	—	—	—	—	—	—	0.000	—	—	0.566	0.252	0.043	0.639	0.293	0.271	0.165	0.235	0.270	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001442	4.000	1.000	Hsc_gene_22336.t1	Hsc_gene_22336.t1;Hsc_gene_22341.t1;Hsc_gene_22342.t1	—	P29691.4 Elongation factor 2 [Caenorhabditis elegans]	KAI1707051.1 elongation factor tu GTP binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525	GO:0008150_0.813\|GO:0005575_0.762\|GO:0110165_0.758\|GO:0009987_0.682\|GO:0005622_0.634\|GO:0003674_0.601\|GO:0005737_0.540\|GO:0008152_0.528	IPR000640+733-820_733-822+\|IPR000795+17-246_17-356_21-34_65-73_113-123_129-140_165-174+\|IPR004161+405-480+\|IPR005225+19-176+\|IPR005517+614-731_618-731+\|IPR009000+354-491+\|IPR014721+578-731+\|IPR020568+571-735+\|IPR027417+3-251_4-353+\|IPR031157+58-73+\|IPR035647+494-569_736-849+\|IPR041095+497-558+	SM00838+733-822+\|SM00889+614-731+	PF00009+17-246+Elongation_factor_Tu_GTP_binding_domain\|PF00679+733-820+Elongation_factor_G_C-terminus\|PF03144+405-480+Elongation_factor_Tu_domain_2\|PF03764+618-731+Elongation_factor_G,_domain_IV\|PF14492+497-558+Elongation_Factor_G,_domain_III	G3DSA:2.40.30.10:FF:000010+355-494+Translation_elongation_factor_2\|G3DSA:3.30.230.10:FF:000006+578-731+Translation_elongation_factor_2\|G3DSA:3.30.70.240:FF:000003+732-852+Translation_elongation_factor_2\|G3DSA:3.30.70.870:FF:000002+496-572+Translation_elongation_factor_2\|G3DSA:3.40.50.300:FF:000058+3-251+Translation_elongation_factor_2	PTHR42908+3-851+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-852	4v6w_Az	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.576	95132.680	6.514	0.000	28.404	9.390	45.188	54.812	14.671	13.732	49.413

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey60	21103.848	13242.877	17269.806	29961.752	34948.813	29965.390	25204.033	9389.706	27496.796	11713.347	18477.683

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.155	1.041	0.903	0.190	-0.206	-0.239	-1.780	1.567	1.121	—	1.759	—	—

No JSON data available for plots.

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