Hg_chrom8_TN10mRNA_16483
Organism: Heterodera glycines Gene Locus: chr8:8992655-8992879 Feature type: polypeptideProtein Sequence
Length: 46
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.758 | 1.517 | 0.791 | 0.75 | 1.087 | 1.672 | 0.776 | 0.0 | 3.382 | 0.588 | 0.988 | 3.836 | 0.0 | 1.254 | 1.331 | 0.0 | 0.713 | 0.659 | 0.0 | 1.918 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15576
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.471
|
0.547
|
0.204
|
0.472
|
0.105
|
0.317
|
0.060
|
0.122
|
0.662
|
0.490
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001442
|
4.000
|
1.000
|
Hsc_gene_22336.t1
|
Hsc_gene_22336.t1;Hsc_gene_22342.t1
|
— |
P29691.4 Elongation factor 2 [Caenorhabditis elegans]
|
KAF7639314.1 Tr-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.814|GO:0005575_0.733|GO:0110165_0.719|GO:0009987_0.623|GO:0003674_0.525|GO:0065007_0.512
|
IPR009000+2-45+
|
— | — | — |
PTHR42908+1-45+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-46
|
9b0r_CB
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
5296.220
|
7.969
|
1.000
|
23.913
|
6.522
|
41.304
|
58.696
|
13.043
|
10.870
|
41.304
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
26.844
|
29.189
|
115.880
|
22.031
|
10.250
|
7.135
|
12.263
|
37.012
|
38.955
|
0.564
|
17.017
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.755
|
-0.543
|
-2.283
|
-1.132
|
— | — |
2.271
|
-1.449
|
— | — | — | — | — |
No JSON data available for plots.