Hg_chrom8_TN10mRNA_16485
Organism: Heterodera glycines Gene Locus: chr8:8995617-9001041 Feature type: polypeptideProtein Sequence
Length: 666
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.013 | 1.092 | 0.725 | 1.176 | 1.309 | 0.608 | 2.027 | 1.201 | 0.994 | 0.819 | 2.12 | 0.876 | 0.809 | 1.164 | 1.244 | 1.108 | 0.751 | 1.04 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15578
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.774
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
EKKRKLAEMKAAKLRHKGERMHGKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.535
|
0.033
|
0.006
|
0.690
|
0.102
|
0.104
|
0.174
|
0.011
|
0.119
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012377
|
1.000
|
1.000
|
Hsc_gene_22327.t1
|
Hsc_gene_22327.t1
|
— |
Q29RQ3.1 Cytoplasmic dynein 1 intermediate chain 1 [Bos taurus]
|
KAI1724810.1 cytoplasmic dynein 1 intermediate chain 2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.849|GO:0110165_0.846|GO:0005622_0.774|GO:0043226_0.725|GO:0008150_0.720|GO:0043229_0.703|GO:0016020_0.670|GO:0009987_0.669|GO:0003674_0.595|GO:0043228_0.566|GO:0043232_0.566|GO:0005737_0.561|GO:0005488_0.501
|
IPR001680+308-358_363-402_409-452_507-552_557-598_603-641+|IPR015943+280-464_465-650+|IPR036322+318-639+|IPR050687+32-650+
|
SM00320+308-358_363-402_409-452_507-552_557-598_603-641+
|
— | — |
PTHR12442+32-650+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-228
|
1.000
|
229-666
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
74586.070
|
6.533
|
0.500
|
28.228
|
10.060
|
53.153
|
46.847
|
15.165
|
13.063
|
50.300
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1483.682
|
1720.203
|
1702.469
|
1296.636
|
1516.847
|
1633.583
|
2629.630
|
1959.390
|
1183.573
|
931.396
|
1039.472
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.244
|
-0.545
|
-0.284
|
0.195
|
— |
0.697
|
— |
0.567
|
— | — | — | — | — |
No JSON data available for plots.