SCN Proteipedia

Hg_chrom8_TN10mRNA_16486

Organism: Heterodera glycines Gene Locus: chr8:9015067-9021728 Feature type: polypeptide

Protein Sequence

Length: 753

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.359	1.637	0.773	0.458	0.664	2.043	1.059	2.457	0.708	0.754	0.423	1.484	0.332	0.766	0.759	1.347	1.72	0.845	0.306	0.312	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15579	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK	—	—	—	—	—	—	0.000	—	—	0.925	0.140	0.010	0.275	0.023	0.024	0.022	0.016	0.036	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004858	1.000	2.000	Hsc_gene_22326.t1;Hsc_gene_22326.t2	—	—	G5EGN3.1 Transcription factor elt-6 [Caenorhabditis elegans]	EJW78703.1 GATA zinc finger family protein [Wuchereria bancrofti]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0006357\|GO:0008270\|GO:0043565	GO:0008150_0.848\|GO:0003674_0.811\|GO:0005488_0.804\|GO:0009987_0.778\|GO:0005575_0.732\|GO:0110165_0.721\|GO:0065007_0.705\|GO:0050789_0.693\|GO:0050794_0.683\|GO:0097159_0.667\|GO:0005622_0.652\|GO:0003676_0.647\|GO:0032501_0.647\|GO:0032502_0.636\|GO:0048856_0.636\|GO:0016020_0.625\|GO:0043226_0.605\|GO:0043229_0.601\|GO:0003677_0.594\|GO:0008152_0.584\|GO:0019222_0.584\|GO:0031323_0.584\|GO:0044237_0.584\|GO:0009058_0.582\|GO:0044238_0.581\|GO:0080090_0.581\|GO:0043170_0.580\|GO:0060255_0.579\|GO:0043565_0.578\|GO:0030154_0.574\|GO:0048869_0.574\|GO:0009059_0.571\|GO:0044249_0.571\|GO:0048518_0.568\|GO:0009889_0.565\|GO:0010467_0.565\|GO:0010556_0.565\|GO:0031326_0.565\|GO:0006139_0.559\|GO:0010468_0.556\|GO:0048522_0.555\|GO:0034654_0.554\|GO:0007275_0.553\|GO:0016070_0.547\|GO:0090304_0.547\|GO:0141187_0.546\|GO:0019219_0.545\|GO:0032774_0.545\|GO:0051252_0.540\|GO:0006351_0.532\|GO:0006355_0.530\|GO:2001141_0.530\|GO:0043227_0.525\|GO:0003690_0.509\|GO:0043231_0.509\|GO:0048731_0.505	IPR000679+555-605_557-574_560-608_560-611_561-585_561-594_575-592+\|IPR013088+556-612+\|IPR039355+3-723+	SM00401+555-605+	PF00320+561-594+GATA_zinc_finger	—	PTHR10071+3-723+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-312;499-753	1.000	313-498	8vg1_T	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.807	78954.330	6.755	5.500	19.655	7.570	54.582	45.418	11.421	8.234	62.683

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1474.483	4887.731	1611.786	1461.616	1419.535	928.580	1040.321	1194.284	1631.659	523.172	998.238

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.830	-1.879	—	—	-0.598	0.172	—	—	2.325	—	—	—	—

No JSON data available for plots.

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