Hg_chrom8_TN10mRNA_16488
Organism: Heterodera glycines Gene Locus: chr8:9025070-9035577 Feature type: polypeptideProtein Sequence
Length: 1,214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.073 | 0.92 | 0.929 | 0.227 | 1.208 | 1.985 | 1.157 | 1.194 | 0.86 | 0.902 | 0.886 | 1.938 | 0.847 | 1.125 | 1.11 | 1.024 | 0.851 | 0.674 | 0.634 | 0.678 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15581
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRHR,KKVREFSQAQRRSRP,KKWKHQMPLLSFIDKKVRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.821
|
0.056
|
0.003
|
0.456
|
0.039
|
0.055
|
0.048
|
0.021
|
0.047
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012379
|
1.000
|
1.000
|
Hsc_gene_22324.t1
|
Hsc_gene_22324.t1
|
— | — |
CAD2186247.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
— |
IPR004343+555-668_555-690_561-660+|IPR036128+238-369_242-369_388-522_390-524_553-688_558-688_800-932_803-932+
|
SM00719+555-668+
|
PF03126+561-660+Plus-3_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-256;660-799;985-1214
|
2.000
|
257-659;800-984
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
132743.400
|
6.601
|
1.500
|
26.030
|
8.567
|
50.082
|
49.918
|
13.674
|
12.356
|
51.318
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
3233.883
|
7931.595
|
4075.639
|
3958.802
|
3609.082
|
3519.522
|
3072.709
|
2621.883
|
3270.442
|
899.443
|
1915.585
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.190
|
-1.140
|
— |
-0.165
|
— |
-0.185
|
-0.529
|
0.371
|
1.748
|
— |
2.215
|
— | — |
No JSON data available for plots.