SCN Proteipedia

Hg_chrom8_TN10mRNA_16490

Organism: Heterodera glycines Gene Locus: chr8:9039685-9045721 Feature type: polypeptide

Protein Sequence

Length: 688

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.946	0.71	0.978	0.652	1.066	0.857	0.848	1.163	0.614	1.139	0.683	1.71	0.929	1.733	1.75	0.997	1.048	0.903	0.335	0.898	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15583	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRAR,QPRRP,KKDEEKRANAARKRPY	—	—	—	—	—	—	0.000	—	—	0.867	0.026	0.004	0.252	0.065	0.016	0.022	0.002	0.055	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002529	2.000	2.000	Hsc_gene_22322.t1;Hsc_gene_22322.t2	Hsc_gene_22322.t1;Hsc_gene_22322.t2	—	Q96T37.2 RNA-binding protein 15 [Homo sapiens]	KAH7725541.1 Protein GRLD-1 a [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0008150_0.936\|GO:0005575_0.870\|GO:0110165_0.866\|GO:0009987_0.861\|GO:0005622_0.781\|GO:0016020_0.754\|GO:0065007_0.747\|GO:0003674_0.734\|GO:0050789_0.728\|GO:0043226_0.721\|GO:0008152_0.709\|GO:0043229_0.705\|GO:0050794_0.694\|GO:0043170_0.691\|GO:0044237_0.691\|GO:0009058_0.685\|GO:0005488_0.681\|GO:0044249_0.666\|GO:0009059_0.662\|GO:0010467_0.658\|GO:0043227_0.657\|GO:0043231_0.636\|GO:0044238_0.629\|GO:0006139_0.578\|GO:0090304_0.569\|GO:0005634_0.564\|GO:0016070_0.562\|GO:0034654_0.551\|GO:0097159_0.540\|GO:0032774_0.538\|GO:0141187_0.538\|GO:0048519_0.535\|GO:0019222_0.531\|GO:0031323_0.527\|GO:0060255_0.527\|GO:0003676_0.515\|GO:0009889_0.512\|GO:0031326_0.509\|GO:0010556_0.507\|GO:0010468_0.506	IPR000504+86-162_239-317_240-313_241-298_321-394_322-390+\|IPR010912+450-597+\|IPR012677+231-315_316-412+\|IPR016194+449-595_451-594+\|IPR035979+238-396+	SM00360+86-162_240-313_322-390+	PF00076+241-298+RNA_recognition_motif	—	PTHR23189+35-439+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-76;175-246;638-688	2.000	77-174;247-637	1why_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.867	76221.610	8.611	17.000	27.180	9.157	46.948	53.052	15.407	11.773	53.924

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2125.463	6216.487	1730.704	2139.607	2440.877	2195.299	1997.028	1817.158	620.403	1882.163	1341.409

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.075	-1.676	0.415	0.159	—	—	-0.379	0.279	-1.710	1.969	—	—	—

No JSON data available for plots.

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