Hg_chrom8_TN10mRNA_16492
Organism: Heterodera glycines Gene Locus: chr8:9046681-9050293 Feature type: polypeptideProtein Sequence
Length: 511
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.229 | 0.865 | 0.854 | 0.607 | 1.696 | 1.806 | 0.606 | 0.978 | 0.826 | 1.137 | 0.682 | 1.727 | 0.761 | 1.468 | 1.078 | 0.895 | 1.027 | 0.919 | 0.301 | 0.23 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15584
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
37-57
|
0.868
|
48-98
|
0.913
|
— | — |
0.000
|
— | — |
0.352
|
0.319
|
0.019
|
0.374
|
0.529
|
0.195
|
0.390
|
0.035
|
0.243
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012381
|
1.000
|
1.000
|
Hsc_gene_22321.t1
|
Hsc_gene_22321.t1
|
— |
Q28623.2 Sarcolemmal membrane-associated protein [Oryctolagus cuniculus]
|
KAF7639340.1 FHA domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.954|GO:0110165_0.954|GO:0008150_0.780|GO:0016020_0.772|GO:0009987_0.748|GO:0065007_0.732|GO:0050789_0.719|GO:0005622_0.706|GO:0050794_0.694|GO:0071944_0.666|GO:0050896_0.647|GO:0051716_0.624|GO:0007154_0.620|GO:0043226_0.619|GO:0005886_0.617|GO:0023052_0.612|GO:0005737_0.606|GO:0043229_0.588|GO:0051179_0.587|GO:0007165_0.582|GO:0003674_0.522|GO:0051234_0.510|GO:0051641_0.503
|
IPR000253+37-94_38-94_38-115+|IPR008984+10-115+|IPR051176+11-325+
|
SM00240+37-94+
|
PF00498+38-115+FHA_domain
|
— |
PTHR15715+11-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
238-511
|
1.000
|
1-237
|
6ar2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
56013.060
|
4.615
|
-21.000
|
26.614
|
5.871
|
49.902
|
50.098
|
11.742
|
14.873
|
52.055
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1094.190
|
854.510
|
1065.284
|
810.119
|
891.150
|
972.846
|
1268.667
|
803.745
|
1415.471
|
1225.606
|
1306.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.214
|
-0.286
|
— | — |
0.394
|
-0.382
|
0.802
|
— | — | — | — | — |
No JSON data available for plots.