SCN Proteipedia

Hg_chrom8_TN10mRNA_16493

Organism: Heterodera glycines Gene Locus: chr8:9050526-9054552 Feature type: polypeptide

Protein Sequence

Length: 529

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.121	1.011	1.065	0.587	0.945	1.115	0.495	1.512	0.924	1.405	0.573	1.112	2.048	1.018	1.62	0.783	0.992	0.945	0.436	0.612	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15585	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	20-41	0.996	—	—	—	—	0.000	—	—	0.807	0.183	0.005	0.414	0.102	0.103	0.048	0.007	0.065	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012382	1.000	1.000	Hsc_gene_22320.t1	Hsc_gene_22320.t1	—	Q5ZKQ6.1 DNA polymerase epsilon subunit 2 [Gallus gallus]	KAI1715512.1 DNA polymerase alpha/epsilon subunit B domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006260\|GO:0006261\|GO:0008622	GO:0008150_0.954\|GO:0009987_0.897\|GO:0005575_0.873\|GO:0110165_0.868\|GO:0005622_0.820\|GO:0016020_0.780\|GO:0043226_0.750\|GO:0043229_0.738\|GO:0043227_0.715\|GO:0043231_0.701\|GO:0008152_0.693\|GO:0044238_0.667\|GO:0044237_0.657\|GO:0009058_0.651\|GO:0043170_0.637\|GO:0032991_0.630\|GO:0005634_0.621\|GO:0044249_0.619\|GO:0043228_0.617\|GO:0043232_0.617\|GO:0009059_0.604\|GO:0006139_0.596\|GO:0034654_0.583\|GO:0031974_0.582\|GO:0043233_0.582\|GO:0070013_0.578\|GO:0090304_0.578\|GO:0031981_0.574\|GO:0141187_0.573\|GO:0140513_0.556\|GO:0005694_0.552\|GO:0003674_0.548\|GO:0006259_0.541\|GO:0071897_0.538\|GO:0050896_0.537\|GO:0006260_0.534\|GO:0006261_0.534\|GO:0051716_0.505	IPR007185+283-484+\|IPR016266+15-526_19-524+\|IPR024639+19-86+	—	PF04042+283-484+DNA_polymerase_alpha/epsilon_subunit_B\|PF12213+19-86+DNA_polymerases_epsilon_N_terminal	—	PTHR12708+19-524+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;529-529	1.000	3-528	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.606	60026.580	7.711	9.000	26.276	13.043	46.503	53.497	14.745	11.531	48.771

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	505.527	1085.099	679.520	553.274	544.089	423.935	883.189	475.306	415.132	158.678	268.587

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.906	-1.109	-0.187	—	-0.346	1.069	—	1.036	—	—	—	—	—

No JSON data available for plots.

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