Hg_chrom8_TN10mRNA_16494
Organism: Heterodera glycines Gene Locus: chr8:9054812-9056274 Feature type: polypeptideProtein Sequence
Length: 171
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.904 | 0.68 | 0.425 | 0.403 | 0.39 | 1.35 | 0.627 | 0.877 | 0.91 | 0.553 | 0.443 | 3.096 | 0.812 | 2.474 | 1.074 | 1.003 | 1.055 | 1.152 | 0.45 | 1.032 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15586
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
54-74
|
0.899
|
— | — |
0.000
|
— | — |
0.582
|
0.107
|
0.019
|
0.353
|
0.063
|
0.053
|
0.134
|
0.043
|
0.032
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004859
|
2.000
|
1.000
|
Hsc_gene_22319.t1
|
Hsc_gene_22319.t1
|
— |
A8XW44.1 U1 small nuclear ribonucleoprotein C [Caenorhabditis briggsae]
|
KHN77479.1 U1 small nuclear ribonucleoprotein C [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000387|GO:0000398|GO:0003676|GO:0005634|GO:0005685|GO:0008270
|
GO:0005575_0.791|GO:0110165_0.774|GO:0008150_0.700|GO:0016020_0.693|GO:0005622_0.667|GO:0009987_0.631|GO:0043226_0.619|GO:0043229_0.613|GO:0043227_0.588|GO:0043231_0.576|GO:0008152_0.567|GO:0009058_0.544|GO:0044237_0.544|GO:0044238_0.534|GO:0044249_0.517|GO:0003674_0.513|GO:0043170_0.510|GO:0006139_0.505|GO:0009059_0.504|GO:0010467_0.504|GO:0032991_0.502
|
IPR000690+4-36+|IPR003604+1-37+|IPR013085+1-38+|IPR017340+1-130_1-136+|IPR036236+1-56+
|
SM00451+1-37+
|
PF06220+1-38+U1_zinc_finger
|
G3DSA:3.30.160.60:FF:000059+1-61+U1_small_nuclear_ribonucleoprotein_C
|
PTHR31148+1-130+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
155-171
|
1.000
|
1-154
|
4pjo_m
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.936
|
18134.960
|
9.938
|
7.500
|
14.620
|
8.772
|
36.257
|
63.743
|
9.942
|
4.678
|
61.988
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
744.324
|
829.360
|
859.552
|
750.144
|
825.415
|
626.488
|
869.021
|
543.377
|
739.019
|
713.393
|
724.375
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.178
|
-0.282
|
— | — |
-0.383
|
0.482
|
-0.310
|
0.819
|
— | — | — | — | — |
No JSON data available for plots.