Hg_chrom8_TN10mRNA_16497
Organism: Heterodera glycines Gene Locus: chr8:9063079-9064475 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.508 | 1.398 | 1.093 | 0.942 | 1.184 | 0.841 | 1.236 | 1.093 | 1.579 | 0.812 | 1.076 | 1.607 | 1.973 | 1.156 | 0.781 | 0.468 | 0.896 | 1.159 | 0.42 | 0.321 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15588
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.396
|
0.330
|
0.046
|
0.556
|
0.257
|
0.139
|
0.052
|
0.135
|
0.360
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012384
|
1.000
|
1.000
|
Hsc_gene_22315.t1
|
Hsc_gene_22315.t1
|
— |
P52018.1 Peptidyl-prolyl cis-trans isomerase 11 [Caenorhabditis elegans]
|
KAH7720298.1 peptidyl-prolyl cis-trans isomerase 11 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000413|GO:0003755|GO:0006457
|
GO:0005575_0.733|GO:0110165_0.729|GO:0005622_0.654|GO:0005737_0.654|GO:0003674_0.611|GO:0008150_0.570|GO:0016020_0.539
|
IPR002130+20-182_21-181_37-52_71-83_114-129_129-141_142-157+|IPR020892+66-83+|IPR024936+6-183+|IPR029000+5-183_11-183+
|
— |
PF00160+21-181+Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD
|
G3DSA:2.40.100.10:FF:000017+8-183+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR11071+16-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-183
|
8rm5_W
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
20250.180
|
5.668
|
-2.000
|
26.230
|
10.929
|
44.262
|
55.738
|
13.115
|
13.115
|
51.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellowgreen
|
534.955
|
539.994
|
347.141
|
869.623
|
789.195
|
471.097
|
523.813
|
310.880
|
266.767
|
695.947
|
512.013
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.867
|
0.550
|
1.433
|
-0.172
|
-0.730
|
— |
-0.704
|
0.895
|
— | — | — | — | — |
No JSON data available for plots.