Hg_chrom8_TN10mRNA_16498
Organism: Heterodera glycines Gene Locus: chr8:9064631-9065790 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 0.523 | 1.532 | 0.387 | 0.843 | 2.737 | 0.669 | 0.281 | 0.874 | 1.139 | 0.511 | 2.313 | 0.468 | 1.513 | 1.376 | 0.803 | 0.553 | 1.107 | 0.0 | 1.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15589
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.864
|
0.143
|
0.010
|
0.302
|
0.058
|
0.173
|
0.093
|
0.001
|
0.062
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012385
|
1.000
|
1.000
|
Hsc_gene_22314.t1
|
Hsc_gene_22314.t1
|
— |
Q95ZS0.1 Transcription initiation factor TFIID subunit 10 [Caenorhabditis elegans]
|
KAH7728564.1 Taf [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006352
|
GO:0008150_0.926|GO:0005575_0.909|GO:0110165_0.899|GO:0009987_0.872|GO:0005622_0.850|GO:0016020_0.831|GO:0043226_0.807|GO:0043229_0.789|GO:0008152_0.786|GO:0044237_0.781|GO:0043170_0.771|GO:0009058_0.770|GO:0044238_0.769|GO:0043227_0.767|GO:0044249_0.755|GO:0043231_0.753|GO:0009059_0.750|GO:0010467_0.748|GO:0006139_0.743|GO:0034654_0.734|GO:0090304_0.727|GO:0016070_0.726|GO:0141187_0.722|GO:0032774_0.720|GO:0006351_0.706|GO:0006366_0.690|GO:0065007_0.670|GO:0005634_0.661|GO:0050789_0.651|GO:0050794_0.639|GO:0019222_0.571|GO:0031323_0.567|GO:0032991_0.564|GO:0071840_0.564|GO:0060255_0.561|GO:0016043_0.558|GO:0006352_0.553|GO:0006367_0.552|GO:0009889_0.550|GO:0031326_0.548|GO:0010556_0.546|GO:0010468_0.540|GO:0005737_0.523
|
IPR003923+41-178_77-177_90-106_90-139_110-132_152-174+
|
— |
PF03540+90-139+Transcription_initiation_factor_TFIID_23-30kDa_subunit
|
— |
PTHR21242+41-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-67
|
1.000
|
68-178
|
8was_j
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
19935.510
|
4.570
|
-5.500
|
24.157
|
7.303
|
46.067
|
53.933
|
10.674
|
13.483
|
50.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1695.747
|
2312.402
|
1427.408
|
1153.307
|
1176.627
|
1308.610
|
1041.450
|
1780.450
|
2557.770
|
1675.472
|
2053.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.926
|
-1.141
|
-0.198
|
— |
0.168
|
-0.319
|
0.339
|
-0.630
|
— | — | — | — | — |
No JSON data available for plots.