Hg_chrom8_TN10mRNA_16499
Organism: Heterodera glycines Gene Locus: chr8:9065949-9067288 Feature type: polypeptideProtein Sequence
Length: 255
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 0.821 | 0.927 | 0.676 | 1.111 | 0.704 | 0.98 | 1.373 | 0.959 | 1.06 | 1.248 | 1.384 | 1.852 | 0.528 | 1.681 | 0.616 | 1.029 | 1.01 | 0.302 | 1.038 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRVK,KRIMTFGEESGRGRRRHI
|
6-54
|
0.985
|
13-51
|
0.974
|
— | — |
0.000
|
— | — |
0.109
|
0.901
|
0.036
|
0.135
|
0.144
|
0.032
|
0.080
|
0.008
|
0.040
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012386
|
1.000
|
1.000
|
Hsc_gene_22313.t1
|
Hsc_gene_22313.t1
|
— |
Q9BVV7.1 Mitochondrial import inner membrane translocase subunit Tim21 [Homo sapiens]
|
KAI1715520.1 TIM21 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005744|GO:0030150
|
GO:0005575_0.885|GO:0110165_0.880|GO:0005622_0.802|GO:0016020_0.795|GO:0005737_0.785|GO:0043226_0.775|GO:0043229_0.766|GO:0043227_0.727|GO:0043231_0.727|GO:0008150_0.679|GO:0009987_0.606|GO:0005739_0.575
|
IPR013261+54-252_111-252+|IPR038552+147-254+
|
— |
PF08294+111-252+TIM21
|
— |
PTHR13032+54-252+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-255
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
29021.350
|
9.930
|
15.500
|
30.980
|
13.333
|
47.843
|
52.157
|
19.216
|
11.765
|
46.275
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
561.368
|
525.759
|
613.348
|
705.265
|
891.506
|
645.759
|
1066.223
|
410.165
|
167.150
|
508.865
|
362.416
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.286
|
0.311
|
0.306
|
-0.451
|
0.735
|
-0.760
|
1.522
|
— | — | — | — | — |
No JSON data available for plots.