Hg_chrom8_TN10mRNA_16500
Organism: Heterodera glycines Gene Locus: chr8:9067713-9078044 Feature type: polypeptideProtein Sequence
Length: 1,711
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 0.979 | 0.839 | 0.705 | 1.003 | 1.544 | 0.661 | 1.081 | 1.299 | 1.453 | 0.682 | 1.856 | 1.023 | 0.719 | 0.954 | 1.261 | 1.092 | 0.965 | 0.45 | 0.567 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15591
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
nucleus
|
— |
RKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.599
|
0.098
|
0.005
|
0.450
|
0.167
|
0.281
|
0.276
|
0.017
|
0.180
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004860
|
1.000
|
2.000
|
Hsc_gene_22312.t1;Hsc_gene_22312.t2
|
Hsc_gene_22312.t1;Hsc_gene_22312.t2
|
— |
Q7Z6Z7.3 E3 ubiquitin-protein ligase HUWE1 [Homo sapiens]
|
KAI3414215.1 E3 ubiquitin-protein ligase huwe1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.801|GO:0110165_0.799|GO:0016020_0.729|GO:0005622_0.706|GO:0008150_0.673|GO:0043226_0.656|GO:0043229_0.637|GO:0009987_0.630|GO:0003674_0.621|GO:0043227_0.595|GO:0065007_0.587|GO:0043231_0.569|GO:0050789_0.534|GO:0050794_0.517
|
IPR009060+1313-1375+|IPR010309+92-157+|IPR010314+425-659+|IPR015940+1328-1367_1329-1364+
|
— |
PF00627+1329-1364+UBA/TS-N_domain|PF06012+92-157+Domain_of_Unknown_Function_(DUF908)|PF06025+425-659+Domain_of_Unknown_Function_(DUF913)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1367-1535;1696-1711
|
2.000
|
1-1366;1536-1695
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
188246.370
|
6.228
|
-6.500
|
21.975
|
8.358
|
47.691
|
52.309
|
11.338
|
10.637
|
50.672
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2393.938
|
4241.920
|
2568.294
|
2452.746
|
3038.682
|
2667.220
|
3892.604
|
1787.793
|
2192.942
|
1085.297
|
1560.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.953
|
-0.927
|
— |
0.278
|
-0.174
|
0.556
|
-0.680
|
1.264
|
— | — | — | — | — |
No JSON data available for plots.