Hg_chrom8_TN10mRNA_16501
Organism: Heterodera glycines Gene Locus: chr8:9078732-9080829 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 1.182 | 1.171 | 0.351 | 0.678 | 0.695 | 1.009 | 2.203 | 0.452 | 1.42 | 1.284 | 1.795 | 1.318 | 0.587 | 0.346 | 0.969 | 1.223 | 0.873 | 1.304 | 0.698 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15592
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.232
|
0.476
|
0.027
|
0.610
|
0.291
|
0.277
|
0.301
|
0.008
|
0.282
|
0.173
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012387
|
1.000
|
1.000
|
Hsc_gene_22311.t1
|
Hsc_gene_22311.t1
|
— |
Q21752.2 Probable voltage-dependent anion-selective channel [Caenorhabditis elegans]
|
KAH7729580.1 Protein R05G6.7 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005741|GO:0008308|GO:0055085|GO:0098656
|
GO:0005575_0.839|GO:0110165_0.839|GO:0005622_0.758|GO:0008150_0.753|GO:0016020_0.735|GO:0005737_0.729|GO:0043226_0.693|GO:0043229_0.686|GO:0043227_0.663|GO:0043231_0.658|GO:0009987_0.625|GO:0003674_0.553
|
IPR001925+2-280_3-282_4-19_67-82_147-158_247-264+|IPR023614+1-282+|IPR027246+2-276+
|
— |
PF01459+2-276+Eukaryotic_porin
|
G3DSA:2.40.160.10:FF:000012+1-281+Voltage-dependent_anion-selective_channel
|
PTHR11743+2-280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.713
|
32153.470
|
7.347
|
5.500
|
25.085
|
13.220
|
47.119
|
52.881
|
14.576
|
10.508
|
54.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
purple
|
5402.185
|
5047.974
|
5114.982
|
5904.066
|
7128.246
|
5976.106
|
4764.857
|
5059.449
|
4245.703
|
5826.903
|
5149.246
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.210
|
0.089
|
0.315
|
0.240
|
-0.239
|
-0.316
|
-0.347
|
— | — | — | — | — | — |
No JSON data available for plots.