Hg_chrom8_TN10mRNA_16502
Organism: Heterodera glycines Gene Locus: chr8:9080946-9089304 Feature type: polypeptideProtein Sequence
Length: 864
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.767 | 1.642 | 0.989 | 0.718 | 0.849 | 1.306 | 0.827 | 1.157 | 1.157 | 1.267 | 0.719 | 0.885 | 1.318 | 1.002 | 1.299 | 1.009 | 1.025 | 0.912 | 0.623 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15593
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.288
|
0.156
|
0.057
|
0.550
|
0.175
|
0.522
|
0.232
|
0.016
|
0.580
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012388
|
1.000
|
1.000
|
Hsc_gene_22310.t1
|
Hsc_gene_22310.t1
|
— |
P51178.2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 [Homo sapiens]
|
KAI1715497.1 phosphatidylinositol-specific phospholipase c, X domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004435|GO:0005509|GO:0006629|GO:0007165|GO:0008081|GO:0035556
|
GO:0008150_0.843|GO:0005575_0.789|GO:0110165_0.780|GO:0009987_0.769|GO:0003674_0.695|GO:0065007_0.679|GO:0005622_0.608|GO:0050789_0.598|GO:0016020_0.537|GO:0050794_0.532
|
IPR000008+712-837_731-826_731-836+|IPR000909+387-531_389-531+|IPR001192+148-863_392-410_418-438_515-532_655-676_676-694+|IPR001711+601-717_620-714_631-716+|IPR002048+215-250+|IPR011992+217-385+|IPR011993+102-209+|IPR017946+384-725_387-718+|IPR018247+228-240+|IPR035892+726-864_730-828+
|
SM00148+387-531+|SM00149+601-717+|SM00239+731-836+
|
PF00168+731-826+C2_domain|PF00387+620-714+Phosphatidylinositol-specific_phospholipase_C,_Y_domain|PF00388+389-531+Phosphatidylinositol-specific_phospholipase_C,_X_domain
|
— |
PTHR10336+148-863+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;515-605
|
2.000
|
78-514;606-864
|
9ax5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
96160.800
|
8.033
|
15.000
|
23.958
|
9.954
|
49.421
|
50.579
|
13.426
|
10.532
|
52.662
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1601.099
|
2169.921
|
1802.244
|
674.973
|
835.649
|
981.028
|
1143.331
|
3805.122
|
978.748
|
1991.146
|
1557.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.497
|
-1.822
|
-1.308
|
0.277
|
0.245
|
0.232
|
1.867
|
-1.599
|
— | — | — | — | — |
No JSON data available for plots.