Hg_chrom8_TN10mRNA_16504
Organism: Heterodera glycines Gene Locus: chr8:9099678-9103892 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.186 | 0.502 | 0.856 | 0.541 | 0.752 | 0.905 | 0.724 | 0.98 | 1.307 | 1.378 | 0.446 | 1.845 | 1.852 | 0.943 | 2.041 | 0.952 | 0.9 | 0.802 | 1.357 | 0.692 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15595
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.814
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.105
|
0.847
|
0.049
|
0.191
|
0.116
|
0.069
|
0.134
|
0.221
|
0.093
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012390
|
1.000
|
1.000
|
Hsc_gene_22307.t1
|
Hsc_gene_22307.t1;Hsc_gene_22308.t1
|
— |
Q6GLA2.1 Mitochondrial S-adenosylmethionine carrier protein [Xenopus tropicalis]
|
KAF7639855.1 Phosphoinositide phospholipase C [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.835|GO:0110165_0.832|GO:0008150_0.779|GO:0016020_0.767|GO:0005622_0.739|GO:0043226_0.694|GO:0005737_0.687|GO:0043229_0.670|GO:0043227_0.660|GO:0009987_0.658|GO:0043231_0.646|GO:0003674_0.610|GO:0051179_0.540|GO:0006810_0.536|GO:0051234_0.536
|
IPR018108+240-313_246-315_323-406_327-407_414-469+|IPR023395+235-471_241-470+
|
— |
PF00153+246-315_327-407_414-469+Mitochondrial_carrier_protein
|
— |
PTHR45667+226-468+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-510
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
57772.980
|
10.215
|
24.000
|
24.118
|
12.745
|
41.961
|
58.039
|
14.902
|
9.216
|
47.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
1154.129
|
655.424
|
705.843
|
678.423
|
809.628
|
645.016
|
797.312
|
522.511
|
833.281
|
2619.043
|
1853.716
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.123
|
— | — |
0.223
|
-0.313
|
0.317
|
-0.410
|
0.753
|
— | — | — | — | — |
No JSON data available for plots.