SCN Proteipedia

Hg_chrom8_TN10mRNA_16505

Organism: Heterodera glycines Gene Locus: chr8:9104300-9106968 Feature type: polypeptide

Protein Sequence

Length: 274

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.764	1.019	1.327	0.881	1.277	0.749	0.434	1.642	1.784	0.888	0.995	1.717	1.115	0.842	1.49	0.991	0.778	0.719	2.807	0.537	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15596	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.403

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	62-83	0.996	55-82	0.984	—	—	0.000	—	—	0.226	0.317	0.031	0.523	0.245	0.091	0.164	0.009	0.114	0.251

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012391	1.000	1.000	Hsc_gene_22306.t1	Hsc_gene_22306.t1	—	—	KAH7717353.1 F-box only protein 6 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.931\|GO:0005575_0.874\|GO:0110165_0.868\|GO:0009987_0.862\|GO:0005622_0.812\|GO:0008152_0.802\|GO:0065007_0.790\|GO:0044238_0.788\|GO:0050789_0.781\|GO:0050896_0.775\|GO:0050794_0.756\|GO:0005737_0.755\|GO:0043170_0.753\|GO:0051716_0.743\|GO:0019538_0.728\|GO:0006139_0.725\|GO:0006950_0.721\|GO:0048519_0.716\|GO:0090304_0.709\|GO:0023052_0.708\|GO:0007154_0.705\|GO:0048523_0.705\|GO:0009056_0.701\|GO:0007165_0.699\|GO:0033554_0.692\|GO:0009057_0.686\|GO:0006259_0.681\|GO:0035556_0.681\|GO:0006508_0.679\|GO:0007049_0.679\|GO:0022402_0.679\|GO:0006974_0.678\|GO:0030163_0.678\|GO:0051726_0.677\|GO:0006281_0.674\|GO:0010498_0.674\|GO:0010564_0.674\|GO:0051603_0.674\|GO:0000075_0.670\|GO:0000077_0.670\|GO:0006511_0.670\|GO:0010948_0.670\|GO:0019941_0.670\|GO:0031146_0.670\|GO:0031570_0.670\|GO:0042770_0.670\|GO:0043161_0.670\|GO:0043632_0.670\|GO:0044770_0.670\|GO:0045786_0.670\|GO:1901987_0.670\|GO:1901988_0.670\|GO:0032991_0.638\|GO:0005829_0.626\|GO:1902494_0.571\|GO:0140535_0.556\|GO:1990234_0.549\|GO:0000151_0.540\|GO:0019005_0.540\|GO:0031461_0.540	IPR001810+12-45+\|IPR007397+70-257_72-274_126-249+\|IPR008979+72-249+\|IPR036047+11-82+\|IPR039752+7-253+	SM01198+70-257+	PF00646+12-45+F-box_domain\|PF04300+126-249+F-box_associated_region	—	PTHR12125+7-253+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	258-274	1.000	1-257	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.511	31958.410	6.757	1.500	32.117	12.774	51.095	48.905	17.153	14.964	45.255

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	midnightblue	525.251	498.072	366.436	303.534	409.381	697.883	638.182	831.312	575.578	461.988	510.670

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.673	-0.852	-0.163	0.399	0.784	—	—	—	—	—	—	—	—

No JSON data available for plots.

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