Hg_chrom8_TN10mRNA_16507
Organism: Heterodera glycines Gene Locus: chr8:9111434-9114930 Feature type: polypeptideProtein Sequence
Length: 456
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 0.867 | 1.196 | 1.361 | 0.987 | 1.406 | 0.835 | 2.303 | 1.121 | 1.304 | 0.565 | 1.548 | 1.157 | 0.548 | 1.164 | 0.595 | 0.683 | 1.296 | 1.181 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15598
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.444
|
0.028
|
0.638
|
0.276
|
0.198
|
0.100
|
0.104
|
0.092
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012393
|
1.000
|
1.000
|
Hsc_gene_22304.t1
|
Hsc_gene_22304.t1
|
— |
A0LMI3.2 5-methylthioadenosine/S-adenosylhomocysteine deaminase [Syntrophobacter fumaroxidans MPOB]
|
KAI1724948.1 amidohydrolase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787|GO:0016810
|
GO:0003674_0.773|GO:0003824_0.679|GO:0008150_0.599|GO:0016787_0.590|GO:0016810_0.541|GO:0009987_0.531
|
IPR006680+65-449+|IPR011059+13-454+|IPR032466+67-392+|IPR051607+4-454+
|
— |
PF01979+65-449+Amidohydrolase_family
|
— |
PTHR11271+4-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-456
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
50918.250
|
6.218
|
-3.500
|
26.535
|
11.842
|
44.079
|
55.921
|
14.035
|
12.500
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
348.213
|
98.103
|
378.934
|
430.313
|
1043.008
|
573.710
|
304.787
|
600.178
|
25.552
|
218.382
|
135.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.719
|
1.997
|
0.294
|
1.245
|
-0.848
|
-0.904
|
— |
-0.834
|
— |
4.266
|
— | — | — |
No JSON data available for plots.