Hg_chrom8_TN10mRNA_16510
Organism: Heterodera glycines Gene Locus: chr8:9125308-9125838 Feature type: polypeptideProtein Sequence
Length: 108
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.615 | 0.646 | 0.337 | 0.639 | 0.154 | 0.712 | 1.323 | 0.0 | 1.029 | 2.127 | 0.421 | 1.634 | 2.058 | 0.712 | 0.945 | 1.323 | 0.759 | 0.982 | 0.0 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15600
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
0.997
|
— | — | — | — |
0.004
|
— | — |
0.066
|
0.936
|
0.003
|
0.054
|
0.043
|
0.039
|
0.040
|
0.038
|
0.176
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012394
|
1.000
|
1.000
|
Hsc_gene_22302.t1
|
Hsc_gene_22302.t1
|
Y82E9BR.3
|
A8XDX2.1 ATP synthase lipid-binding protein, mitochondrial [Caenorhabditis briggsae]
|
KAF7631032.1 ATP-synt_C domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015078|GO:0015986|GO:0033177|GO:0045263|GO:1902600
|
GO:0005575_0.908|GO:0110165_0.902|GO:0016020_0.814|GO:0005622_0.623|GO:0005737_0.623|GO:0043226_0.600|GO:0043229_0.577|GO:0043227_0.570|GO:0043231_0.563
|
IPR000454+23-108_37-105_42-61_63-78_80-105+|IPR002379+42-104+|IPR020537+70-91+|IPR035921+37-107+|IPR038662+35-106+
|
— |
PF00137+42-104+ATP_synthase_subunit_C
|
G3DSA:1.20.20.10:FF:000003+35-106+Atp_synthase_f_complex_subunit_mitochondrial
|
PTHR10031+23-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-108
|
9bpg_8
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
11235.280
|
10.111
|
5.000
|
10.185
|
10.185
|
29.630
|
70.370
|
7.407
|
2.778
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
10389.465
|
878.279
|
3956.550
|
10219.863
|
17780.876
|
13338.187
|
5219.216
|
6206.815
|
5628.562
|
19632.566
|
13630.850
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.942
|
3.404
|
1.478
|
0.767
|
-0.400
|
-1.344
|
-1.212
|
— |
-1.908
|
— | — | — | — |
No JSON data available for plots.