Hg_chrom8_TN10mRNA_16511
Organism: Heterodera glycines Gene Locus: chr8:9126637-9128646 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.723 | 1.205 | 1.319 | 0.357 | 1.641 | 0.399 | 0.864 | 0.777 | 0.921 | 1.12 | 1.099 | 2.133 | 1.151 | 1.096 | 0.634 | 1.036 | 0.849 | 0.785 | 0.797 | 1.524 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15601
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKYANKEALEALDKKTMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.750
|
0.101
|
0.020
|
0.538
|
0.267
|
0.163
|
0.203
|
0.040
|
0.115
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012395
|
1.000
|
1.000
|
Hsc_gene_22301.t1
|
Hsc_gene_22301.t1
|
— |
P62256.1 Ubiquitin-conjugating enzyme E2 H [Homo sapiens]
|
KAF7639848.1 Ubiquitin-conjugating enzyme E2 H [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.891|GO:0003674_0.727|GO:0008152_0.691|GO:0044238_0.670|GO:0043170_0.649|GO:0019538_0.632|GO:0003824_0.604|GO:0005575_0.594|GO:0110165_0.590|GO:0016740_0.550|GO:0005622_0.545|GO:0140096_0.543|GO:0016746_0.531|GO:0016755_0.524|GO:0019787_0.524|GO:0004842_0.522|GO:0009987_0.507
|
IPR000608+1-150_9-145_30-144+|IPR016135+6-160_7-151+|IPR023313+75-91+
|
SM00212+5-150+
|
PF00179+30-144+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000078+4-160+ubiquitin-conjugating_enzyme_E2_H_isoform_X2
|
PTHR24068+31-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;157-193
|
1.000
|
3-156
|
2z5d_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
21714.340
|
4.389
|
-11.500
|
29.016
|
11.917
|
48.187
|
51.813
|
11.917
|
17.098
|
50.259
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1618.478
|
1032.385
|
584.233
|
504.474
|
604.134
|
660.817
|
875.952
|
1495.165
|
495.207
|
4550.500
|
2812.517
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.051
|
-1.170
|
— |
0.228
|
— |
0.417
|
1.072
|
-0.628
|
-3.301
|
— |
-2.491
|
— | — |
No JSON data available for plots.