Hg_chrom8_TN10mRNA_16514
Organism: Heterodera glycines Gene Locus: chr8:9136946-9141416 Feature type: polypeptideProtein Sequence
Length: 578
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 0.805 | 0.723 | 0.597 | 0.75 | 0.532 | 0.741 | 1.125 | 1.769 | 1.543 | 0.708 | 1.425 | 2.067 | 0.732 | 0.706 | 0.741 | 0.879 | 1.153 | 1.597 | 2.188 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15604
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-18
|
0.999
|
1.000
|
9.000
|
9.000
|
0.081
|
0.087
|
0.004
|
0.207
|
0.450
|
0.560
|
0.517
|
0.016
|
0.629
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012397
|
1.000
|
1.000
|
Hsc_gene_22298.t1
|
Hsc_gene_22298.t1
|
— |
Q9HD45.2 Transmembrane 9 superfamily member 3 [Homo sapiens]
|
KAI1715447.1 endomembrane protein 70 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.901|GO:0110165_0.901|GO:0016020_0.891|GO:0005886_0.880|GO:0071944_0.880|GO:0005622_0.713|GO:0005737_0.713|GO:0005773_0.713|GO:0043226_0.713|GO:0043227_0.713|GO:0043229_0.713|GO:0043231_0.713|GO:0012505_0.652|GO:0008150_0.577
|
IPR004240+14-578_47-534+
|
— |
PF02990+47-534+Endomembrane_protein_70
|
— |
PTHR10766+14-578+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-578
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
66472.670
|
7.090
|
4.500
|
18.858
|
19.204
|
34.948
|
65.052
|
10.381
|
8.478
|
44.291
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
2241.429
|
1827.034
|
1916.705
|
1966.127
|
2511.481
|
3131.922
|
2205.687
|
2276.979
|
1699.823
|
2592.910
|
2210.158
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.160
|
— |
0.145
|
0.321
|
0.334
|
-0.498
|
-0.564
|
— | — | — | — | — | — |