Hg_chrom8_TN10mRNA_16515
Organism: Heterodera glycines Gene Locus: chr8:9141759-9143549 Feature type: polypeptideProtein Sequence
Length: 177
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.526 | 0.263 | 1.335 | 1.753 | 1.412 | 0.435 | 0.538 | 0.847 | 1.381 | 1.527 | 2.226 | 1.994 | 0.785 | 0.978 | 0.346 | 0.969 | 0.648 | 1.027 | 0.435 | 0.665 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15605
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-23
|
0.991
|
1.000
|
0.000
|
0.000
|
0.172
|
0.167
|
0.020
|
0.314
|
0.939
|
0.177
|
0.208
|
0.056
|
0.384
|
0.436
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012398
|
1.000
|
1.000
|
Hsc_gene_22297.t1
|
Hsc_gene_22297.t1;Hsc_gene_22297.t2
|
— |
Q9N3B0.2 Mesencephalic astrocyte-derived neurotrophic factor homolog [Caenorhabditis elegans]
|
KAI1724895.1 degradation arginine-rich protein for mis-folding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.799|GO:0065007_0.731|GO:0005575_0.703|GO:0110165_0.700|GO:0005622_0.653|GO:0009987_0.621|GO:0005737_0.582|GO:0050789_0.581|GO:0016020_0.512|GO:0043226_0.505
|
IPR019345+134-172+|IPR036361+128-176_133-171+|IPR045332+29-127+|IPR045333+9-172+
|
— |
PF10208+134-172+ARMET,_C-terminal|PF20145+29-127+ARMET,_N-terminal
|
— |
PTHR12990+9-172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-177
|
2w51_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.566
|
19915.520
|
7.480
|
2.500
|
33.898
|
7.345
|
47.458
|
52.542
|
18.079
|
15.819
|
45.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
2778.456
|
949.068
|
1248.689
|
3011.607
|
3308.137
|
2489.986
|
1473.090
|
1361.047
|
4065.862
|
3915.737
|
3980.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.168
|
1.529
|
1.377
|
— |
-0.395
|
-0.748
|
-0.973
|
— | — | — | — | — | — |