Hg_chrom8_TN10mRNA_16516
Organism: Heterodera glycines Gene Locus: chr8:9143834-9146182 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.327 | 0.624 | 1.098 | 0.231 | 1.007 | 1.205 | 0.399 | 1.007 | 1.641 | 1.451 | 0.915 | 1.184 | 0.932 | 1.807 | 1.096 | 0.575 | 0.88 | 0.712 | 1.549 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15606
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.413
|
0.151
|
0.006
|
0.624
|
0.159
|
0.109
|
0.246
|
0.116
|
0.185
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012399
|
1.000
|
1.000
|
Hsc_gene_22296.t1
|
Hsc_gene_22296.t1
|
Y54G2A.31
|
Q95XX0.2 Ubiquitin-conjugating enzyme E2 13 [Caenorhabditis elegans]
|
MCP9257430.1 Ubiquitin-conjugating enzyme E2 N [Dirofilaria immitis]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.862|GO:0008152_0.725|GO:0003674_0.709|GO:0005575_0.678|GO:0044238_0.665|GO:0043170_0.638|GO:0110165_0.635|GO:0019538_0.612|GO:0003824_0.603|GO:0016740_0.558|GO:0140096_0.542|GO:0016746_0.538|GO:0016755_0.532|GO:0019787_0.531|GO:0004842_0.530|GO:0005622_0.519|GO:0016020_0.511
|
IPR000608+2-148_4-143_6-142+|IPR016135+1-149_4-147+|IPR023313+75-90+|IPR050113+5-144+
|
SM00212+5-148+
|
PF00179+6-142+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000015+1-149+Ubiquitin-conjugating_enzyme_E2_N
|
PTHR24067+5-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-149
|
6d6i_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
16761.390
|
6.721
|
0.500
|
25.503
|
10.067
|
42.282
|
57.718
|
13.423
|
12.081
|
47.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
greenyellow
|
1738.667
|
1304.253
|
1706.814
|
1451.254
|
1592.120
|
1554.930
|
1542.128
|
2101.400
|
1242.347
|
2455.070
|
1935.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.159
|
— |
-0.126
|
0.102
|
— | — |
0.330
|
-0.304
|
— | — | — | — | — |
No JSON data available for plots.