Hg_chrom8_TN10mRNA_16518
Organism: Heterodera glycines Gene Locus: chr8:9152836-9155705 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 1.219 | 0.913 | 0.979 | 0.837 | 1.232 | 0.702 | 1.201 | 1.359 | 1.652 | 0.926 | 1.413 | 1.638 | 0.924 | 0.98 | 0.936 | 0.68 | 0.893 | 0.672 | 0.899 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15608
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KKEVVEAADRLLRLLRK
|
— | — | — | — | — | — |
0.003
|
— | — |
0.275
|
0.149
|
0.032
|
0.372
|
0.460
|
0.796
|
0.262
|
0.011
|
0.135
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012401
|
1.000
|
1.000
|
Hsc_gene_22294.t1
|
Hsc_gene_22291.t1;Hsc_gene_22294.t1
|
— |
Q6PDG8.3 Vacuolar fusion protein MON1 homolog A [Mus musculus]
|
KAI1715504.1 trafficking protein mon1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006623|GO:0016192
|
GO:0005575_0.808|GO:0110165_0.803|GO:0008150_0.765|GO:0005622_0.746|GO:0016020_0.741|GO:0005737_0.710|GO:0043226_0.697|GO:0043229_0.691|GO:0043227_0.671|GO:0043231_0.655|GO:0009987_0.624|GO:0071944_0.579|GO:0005886_0.576
|
IPR004353+37-54_37-453_55-75_120-148_150-162_178-199_206-219_230-246_256-279_286-312_406-420_422-435_435-455+|IPR043970+341-444+|IPR043971+212-304+|IPR043972+38-166+
|
— |
PF19036+38-166+First_Longin_domain_of_FUZ,_MON1_and_HPS1|PF19037+212-304+Second_Longin_domain_of_FUZ,_MON1_and_HPS1|PF19038+341-444+Third_Longin_domain_of_FUZ,_MON1_and_HPS1
|
— |
PTHR13027+37-453+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
51824.050
|
8.043
|
9.500
|
23.362
|
12.227
|
44.105
|
55.895
|
13.319
|
10.044
|
46.288
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
566.277
|
1265.809
|
523.181
|
515.123
|
559.246
|
577.344
|
517.867
|
595.028
|
329.637
|
522.636
|
439.922
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.505
|
-1.434
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.