Hg_chrom8_TN10mRNA_16522
Organism: Heterodera glycines Gene Locus: chr8:9161086-9163751 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.35 | 0.623 | 0.595 | 0.616 | 0.794 | 0.992 | 1.205 | 1.339 | 1.323 | 1.569 | 0.361 | 1.05 | 1.819 | 0.916 | 1.336 | 0.85 | 0.732 | 1.037 | 0.916 | 0.35 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15612
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.184
|
0.141
|
0.007
|
0.305
|
0.929
|
0.485
|
0.373
|
0.008
|
0.170
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012404
|
1.000
|
1.000
|
Hsc_gene_22287.t1
|
Hsc_gene_22287.t1
|
— |
Q2KIJ5.1 3-ketodihydrosphingosine reductase [Bos taurus]
|
KAI1715488.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006666|GO:0030148|GO:0047560
|
GO:0008150_0.821|GO:0009987_0.694|GO:0003674_0.642|GO:0005575_0.626|GO:0110165_0.626|GO:0008152_0.621|GO:0044238_0.576|GO:0009058_0.537|GO:0044237_0.524|GO:0006629_0.518
|
IPR002347+34-229_35-52_116-127_163-179_189-208+|IPR036291+29-265+|IPR045022+33-269+
|
SM00822+34-230+
|
PF00106+34-229+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000468+30-282+Short-chain_dehydrogenase,_putative
|
PTHR43550+8-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
326-336
|
1.000
|
1-325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
36259.990
|
8.268
|
7.500
|
19.643
|
11.607
|
36.607
|
63.393
|
11.607
|
8.036
|
51.488
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
623.633
|
206.212
|
628.580
|
577.133
|
607.028
|
505.626
|
631.168
|
635.651
|
741.085
|
750.804
|
746.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.381
|
1.348
|
— | — |
-0.249
|
0.330
|
— | — | — | — | — | — | — |
No JSON data available for plots.