Hg_chrom8_TN10mRNA_16523
Organism: Heterodera glycines Gene Locus: chr8:9166993-9172523 Feature type: polypeptideProtein Sequence
Length: 744
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 0.688 | 0.733 | 0.695 | 1.389 | 1.103 | 0.736 | 1.344 | 1.225 | 1.362 | 0.754 | 1.898 | 1.307 | 0.75 | 1.426 | 0.653 | 0.749 | 1.12 | 1.964 | 1.028 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15613
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.896
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RKRR,RRENGHQKQQQQREKDKKE,RERRNREEEEERSDKREKMGRRGGKREGKE
|
50-71
|
0.991
|
44-75
|
0.998
|
— | — |
0.000
|
— | — |
0.140
|
0.106
|
0.015
|
0.182
|
0.344
|
0.650
|
0.331
|
0.003
|
0.591
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012405
|
1.000
|
1.000
|
Hsc_gene_22285.t1
|
Hsc_gene_22285.t1
|
— | — |
NP_501209.4 Otopetrin-2 [Caenorhabditis elegans];CCD69401.1 Otopetrin-2 [Caenorhabditis elegans]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
573-744
|
1.000
|
1-572
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.494
|
85719.030
|
7.122
|
7.000
|
27.016
|
13.441
|
43.414
|
56.586
|
14.651
|
12.366
|
43.145
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1101.056
|
863.787
|
739.933
|
368.191
|
174.218
|
204.662
|
59.351
|
565.314
|
445.721
|
3367.031
|
2115.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.454
|
-1.368
|
-0.897
|
-1.111
|
— |
-1.776
|
1.365
|
-3.111
|
— | — |
-3.755
|
— | — |
No JSON data available for plots.