Hg_chrom8_TN10mRNA_16524
Organism: Heterodera glycines Gene Locus: chr8:9173147-9177608 Feature type: polypeptideProtein Sequence
Length: 605
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 1.576 | 0.962 | 2.052 | 0.909 | 1.611 | 1.2 | 1.488 | 0.404 | 0.916 | 0.877 | 1.361 | 1.01 | 0.604 | 1.248 | 0.945 | 0.894 | 0.701 | 1.399 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15614
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.937
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRKNTDGNSSSVGRERQK
|
21-46
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.204
|
0.134
|
0.027
|
0.677
|
0.035
|
0.106
|
0.221
|
0.027
|
0.358
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012406
|
1.000
|
1.000
|
Hsc_gene_22283.t1
|
Hsc_gene_22283.t1
|
— |
Q6INU3.1 PDZ and LIM domain protein 7 [Xenopus laevis]
|
KAI6171395.1 PDZ and LIM domain protein Zasp [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.876|GO:0005575_0.852|GO:0110165_0.846|GO:0009987_0.687|GO:0003674_0.666|GO:0005622_0.662|GO:0005488_0.617|GO:0065007_0.576|GO:0043226_0.564|GO:0050789_0.562|GO:0005515_0.561|GO:0050794_0.552|GO:0043229_0.520
|
IPR001781+419-474_481-540_482-533_483-534_541-594_541-601_542-577_542-594+|IPR050604+279-596+
|
SM00132+419-474_482-533_541-594+
|
PF00412+483-534_542-594+LIM_domain
|
G3DSA:2.10.110.10:FF:000008+478-535+Paxillin_isoform_1
|
PTHR24214+279-596+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-92;247-415
|
2.000
|
93-246;416-605
|
7qb0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
66805.760
|
7.877
|
16.000
|
25.620
|
10.248
|
50.744
|
49.256
|
14.876
|
10.744
|
55.207
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
salmon
|
148.406
|
127.371
|
60.560
|
45.613
|
117.366
|
383.061
|
176.640
|
100.522
|
66.967
|
219.876
|
154.344
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.306
|
-1.619
|
— |
1.334
|
1.722
|
-1.108
|
-2.040
|
0.957
|
— | — | — | — | — |
No JSON data available for plots.