Hg_chrom8_TN10mRNA_16529
Organism: Heterodera glycines Gene Locus: chr8:9217981-9220291 Feature type: polypeptideProtein Sequence
Length: 358
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.942 | 1.104 | 1.371 | 0.0 | 2.654 | 1.647 | 0.931 | 0.559 | 0.931 | 1.208 | 0.677 | 1.643 | 0.543 | 0.376 | 1.995 | 0.559 | 0.641 | 0.593 | 0.0 | 0.739 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15619
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKIERRRREMDQLQKRLAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.107
|
0.025
|
0.395
|
0.089
|
0.172
|
0.197
|
0.015
|
0.090
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002530
|
3.000
|
1.000
|
Hsc_gene_22282.t1
|
Hsc_gene_22282.t1
|
— |
Q6I6D4.2 Clusterin-associated protein 1 homolog [Caenorhabditis elegans]
|
KAI1724939.1 clusterin-associated protein-1 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.903|GO:0110165_0.897|GO:0005622_0.869|GO:0016020_0.798|GO:0043226_0.791|GO:0032991_0.733|GO:0043227_0.725|GO:0008150_0.723|GO:0071944_0.703|GO:0005886_0.699|GO:0009987_0.668|GO:0042995_0.618|GO:0098590_0.618|GO:0120025_0.618|GO:0030990_0.579|GO:0005929_0.576|GO:0071840_0.573|GO:0016043_0.568|GO:0032501_0.534|GO:0051179_0.528|GO:0051234_0.514|GO:0051641_0.512|GO:0006810_0.511|GO:0006996_0.509
|
IPR019366+32-340_35-191+
|
— |
PF10234+35-191+Clusterin-associated_protein-1
|
— |
PTHR21547+32-340+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;186-358
|
1.000
|
41-185
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.937
|
40927.890
|
4.320
|
-31.000
|
38.827
|
5.587
|
57.821
|
42.179
|
15.363
|
23.464
|
41.899
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
62.313
|
14.396
|
22.262
|
13.475
|
4.485
|
4.406
|
3.146
|
6.023
|
129.700
|
149.771
|
141.169
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.613
|
-1.623
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.