Hg_chrom8_TN10mRNA_16532
Organism: Heterodera glycines Gene Locus: chr8:9231569-9233760 Feature type: polypeptideProtein Sequence
Length: 359
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 0.972 | 0.912 | 0.768 | 0.557 | 1.071 | 0.63 | 1.253 | 1.238 | 1.656 | 0.295 | 1.475 | 1.857 | 1.286 | 1.592 | 0.875 | 0.776 | 1.224 | 1.714 | 0.819 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15622
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
1-21
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.121
|
0.174
|
0.008
|
0.174
|
0.835
|
0.376
|
0.582
|
0.007
|
0.312
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004862
|
2.000
|
1.000
|
Hsc_gene_22281.t1
|
Hsc_gene_22281.t1
|
— | — |
KAI1715482.1 mitochondrial matrix mmp37 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006506|GO:0016787
|
GO:0005575_0.899|GO:0110165_0.888|GO:0071944_0.855|GO:0016020_0.847|GO:0005886_0.845|GO:0005622_0.734|GO:0005737_0.731|GO:0043226_0.715|GO:0043227_0.715|GO:0005773_0.708|GO:0043229_0.708|GO:0043231_0.708|GO:0012505_0.677|GO:0008150_0.622|GO:0005783_0.609|GO:0009987_0.560
|
IPR004843+51-241+|IPR029052+47-250_49-267+|IPR033308+226-353+
|
— |
PF00149+51-241+Calcineurin-like_phosphoesterase
|
— |
PTHR13315+226-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-359
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
41095.800
|
8.482
|
9.500
|
20.613
|
14.206
|
39.833
|
60.167
|
12.256
|
8.357
|
48.189
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
563.051
|
1055.592
|
460.820
|
358.893
|
294.700
|
286.787
|
270.441
|
472.782
|
126.152
|
1168.730
|
721.911
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.426
|
-1.694
|
-0.252
|
-0.316
|
— | — |
0.618
|
-0.664
|
-3.332
|
— | — | — | — |
No JSON data available for plots.