Hg_chrom8_TN10mRNA_16533
Organism: Heterodera glycines Gene Locus: chr8:9234191-9238621 Feature type: polypeptideProtein Sequence
Length: 603
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.061 | 0.694 | 0.814 | 0.915 | 1.216 | 1.914 | 0.691 | 0.995 | 1.069 | 1.457 | 0.704 | 1.171 | 0.875 | 0.925 | 1.286 | 1.042 | 0.816 | 0.955 | 1.658 | 0.293 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15623
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRECLTYEWLSKHRRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.239
|
0.349
|
0.113
|
0.659
|
0.136
|
0.281
|
0.411
|
0.061
|
0.510
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002531
|
1.000
|
3.000
|
Hsc_gene_22280.t1;Hsc_gene_22280.t2;Hsc_gene_22280.t3
|
Hsc_gene_22280.t1;Hsc_gene_22280.t2;Hsc_gene_22280.t3
|
— | — |
KAF7639868.1 CHK domain-containing protein [Meloidogyne graminicola]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR004119+233-362+|IPR011009+194-529+|IPR015897+310-539+|IPR052961+174-454+
|
SM00587+310-539+
|
PF02958+233-362+Ecdysteroid_kinase-like_family
|
— |
PTHR23020+174-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-603
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
67207.800
|
6.624
|
1.000
|
24.710
|
8.292
|
47.430
|
52.570
|
12.935
|
11.774
|
48.425
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
427.711
|
1106.650
|
539.780
|
297.747
|
184.886
|
158.454
|
221.036
|
250.524
|
281.547
|
625.419
|
478.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.267
|
-2.031
|
-0.749
|
-0.721
|
— |
0.491
|
0.556
|
— | — | — | — | — | — |
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