SCN Proteipedia

Hg_chrom8_TN10mRNA_16536

Organism: Heterodera glycines Gene Locus: chr8:9262671-9269210 Feature type: polypeptide

Protein Sequence

Length: 473

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.885	1.426	1.192	0.656	0.775	1.301	1.107	1.057	1.456	1.457	0.352	1.244	1.057	0.935	1.036	0.876	1.04	0.833	0.488	0.746	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15626	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.001	—	—	0.362	0.209	0.058	0.496	0.216	0.312	0.260	0.071	0.538	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012409	1.000	1.000	Hsc_gene_22271.t5	Hsc_gene_22271.t2;Hsc_gene_22271.t4;Hsc_gene_22271.t5;Hsc_gene_22271.t6	—	Q95V25.2 Calcium-activated potassium channel slo-1 [Caenorhabditis elegans]	KAI1715470.1 calcium-activated BK potassium channel alpha subunit domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.946\|GO:0009987_0.878\|GO:0003674_0.792\|GO:0051179_0.734\|GO:0006810_0.728\|GO:0051234_0.728\|GO:0055085_0.686\|GO:0006811_0.681\|GO:0034220_0.679\|GO:0005575_0.644\|GO:0110165_0.642\|GO:0006812_0.621\|GO:0098660_0.621\|GO:0030001_0.620\|GO:0098655_0.619\|GO:0098662_0.619\|GO:0006813_0.613\|GO:0071805_0.613\|GO:0005215_0.578\|GO:0022857_0.578\|GO:0015075_0.575\|GO:0015267_0.575\|GO:0022803_0.575\|GO:0005216_0.574\|GO:0008324_0.574\|GO:0015318_0.574\|GO:0005261_0.571\|GO:0005267_0.571\|GO:0015079_0.571\|GO:0022890_0.571\|GO:0046873_0.571\|GO:0015276_0.521\|GO:0022834_0.521\|GO:0022836_0.521\|GO:0022839_0.521\|GO:0099094_0.521\|GO:0005227_0.516\|GO:0015269_0.516\|GO:0065007_0.504	IPR047871+42-440+\|IPR048735+324-440+	—	PF21014+324-440+Ca2+-activated_K+_channel_Slowpoke,_TrkA_C_like_domain\|PF22614+95-216+Calcium-activated_potassium_channel_slowpoke-like_RCK_domain	—	PTHR10027+42-440+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-473	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.587	51464.130	4.734	-13.000	20.719	9.091	44.397	55.603	9.514	11.205	54.334

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	64.660	151.045	96.446	52.844	19.920	19.226	16.615	33.320	0.509	136.473	78.203

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.876	-1.653	-0.760	-1.442	—	—	0.691	-0.865	—	5.702	—	—	—

No JSON data available for plots.

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