Hg_chrom8_TN10mRNA_16537
Organism: Heterodera glycines Gene Locus: chr8:9281093-9283398 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.875 | 1.083 | 0.865 | 0.731 | 1.286 | 1.045 | 0.94 | 1.672 | 1.186 | 1.235 | 1.106 | 1.306 | 0.362 | 0.704 | 0.672 | 0.925 | 0.95 | 0.241 | 1.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15627
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.574
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.342
|
0.245
|
0.033
|
0.408
|
0.777
|
0.328
|
0.257
|
0.012
|
0.161
|
0.467
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004853
|
2.000
|
1.000
|
Hsc_gene_9341.t1
|
Hsc_gene_9341.t1
|
— |
Q3SZD7.1 Carbonyl reductase [NADPH] 1 [Bos taurus]
|
KAH7712535.1 oxidoreductaseshort chain dehydrogenase/reductase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.808|GO:0008150_0.767|GO:0003824_0.710|GO:0005575_0.702|GO:0110165_0.696|GO:0016491_0.625|GO:0009987_0.578|GO:0008152_0.550|GO:0016614_0.550|GO:0016616_0.550|GO:0016020_0.510
|
IPR002347+39-187_40-57_121-132_172-180_235-279_239-258_260-277+|IPR036291+38-303+
|
— |
PF00106+39-187_235-279+short_chain_dehydrogenase
|
— |
PTHR43963+38-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-319
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
35135.460
|
8.268
|
7.000
|
23.824
|
11.599
|
42.947
|
57.053
|
13.480
|
10.345
|
49.216
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightcyan
|
2213.456
|
1047.294
|
1939.282
|
1724.569
|
2808.177
|
2969.528
|
1868.513
|
3992.305
|
1431.736
|
2478.943
|
2030.140
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
0.582
|
— |
0.672
|
— |
-0.658
|
— |
-0.955
|
— | — | — | — | — |
No JSON data available for plots.