Hg_chrom8_TN10mRNA_16541
Organism: Heterodera glycines Gene Locus: chr8:9292847-9298911 Feature type: polypeptideProtein Sequence
Length: 671
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.074 | 1.219 | 0.771 | 0.795 | 0.841 | 0.727 | 1.863 | 0.861 | 1.39 | 0.926 | 1.315 | 1.78 | 0.774 | 1.125 | 1.235 | 0.855 | 0.835 | 0.802 | 0.701 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15631
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KRAR
|
— | — |
25-51
|
0.936
|
— | — |
0.000
|
— | — |
0.348
|
0.488
|
0.086
|
0.461
|
0.188
|
0.201
|
0.196
|
0.040
|
0.127
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012411
|
1.000
|
1.000
|
Hsc_gene_22273.t1
|
Hsc_gene_22273.t1
|
— |
Q5U3U3.2 Carnitine O-palmitoyltransferase 2, mitochondrial [Danio rerio]
|
KAI1715476.1 choline/Carnitine o-acyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746
|
GO:0008150_0.899|GO:0005575_0.766|GO:0110165_0.762|GO:0005622_0.717|GO:0003674_0.706|GO:0016020_0.682|GO:0008152_0.661|GO:0005737_0.656|GO:0043226_0.648|GO:0043229_0.648|GO:0009987_0.624|GO:0043227_0.613|GO:0043231_0.609|GO:0003824_0.582|GO:0044237_0.505
|
IPR000542+27-666_361-388+|IPR023213+462-670+|IPR039551+46-656+|IPR042231+133-461+|IPR042572+25-132+
|
— |
PF00755+46-656+Choline/Carnitine_o-acyltransferase
|
— |
PTHR22589+27-666+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-671
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.741
|
75356.670
|
7.668
|
13.500
|
26.826
|
13.562
|
48.584
|
51.416
|
15.350
|
11.475
|
50.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2163.427
|
1982.663
|
1764.979
|
2253.851
|
2684.999
|
2660.277
|
2900.141
|
2099.384
|
971.399
|
2606.582
|
1905.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.397
|
— |
0.461
|
0.221
|
— | — |
-0.448
|
0.609
|
— | — | — | — | — |
No JSON data available for plots.