SCN Proteipedia

Hg_chrom8_TN10mRNA_16542

Organism: Heterodera glycines Gene Locus: chr8:9299766-9309786 Feature type: polypeptide

Protein Sequence

Length: 1,598

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.851	1.135	0.922	0.388	0.834	2.567	0.909	2.19	0.848	0.744	0.389	1.472	0.661	1.396	0.996	1.341	1.087	0.948	0.866	0.663	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15632	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.929

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRKRR	—	—	—	—	—	—	0.000	—	—	0.722	0.108	0.006	0.535	0.075	0.081	0.078	0.063	0.128	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004864	1.000	2.000	Hsc_gene_22272.t1;Hsc_gene_22272.t2	—	—	D3ZN95.1 Host cell factor 1 [Rattus norvegicus]	ETN68571.1 kelch repeat protein [Necator americanus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.931\|GO:0005575_0.823\|GO:0110165_0.823\|GO:0009987_0.776\|GO:0005622_0.739\|GO:0065007_0.701\|GO:0050789_0.688\|GO:0050794_0.673\|GO:0008152_0.607\|GO:0003674_0.605\|GO:0016020_0.600\|GO:0043170_0.585\|GO:0005488_0.578\|GO:0044238_0.577\|GO:0043226_0.574\|GO:0044237_0.570\|GO:0009058_0.565\|GO:0019222_0.560\|GO:0031323_0.552\|GO:0060255_0.548\|GO:0043229_0.544\|GO:0080090_0.533\|GO:0009889_0.529\|GO:0009059_0.527\|GO:0044249_0.527\|GO:0010467_0.522\|GO:0010556_0.521\|GO:0031326_0.521\|GO:0010468_0.517\|GO:0006139_0.512\|GO:0034654_0.502\|GO:0090304_0.502\|GO:0141187_0.502\|GO:0043227_0.501	IPR003961+385-539_1202-1312_1227-1325_1293-1322_1328-1440+\|IPR006652+45-83+\|IPR013783+1215-1325_1326-1456+\|IPR015915+6-200_90-372_201-381+\|IPR036116+383-1448+\|IPR043536+23-638+	SM00060+385-539_1202-1312_1328-1440+	PF01344+45-83+Kelch_motif\|PF13415+230-277+Galactose_oxidase,_central_domain\|PF13854+339-377+Kelch_motif	—	PTHR46003+23-638+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	409-1295;1445-1598	2.000	1-408;1296-1444	4go6_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.754	175126.140	6.338	-7.000	21.902	10.138	52.816	47.184	11.827	10.075	55.569

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	orange	2698.117	5620.025	2424.205	1994.499	2446.609	1704.331	2360.034	1582.174	3659.134	2260.459	2859.891

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.442	-1.632	-0.173	0.263	-0.507	0.480	—	0.719	—	—	—	—	—

No JSON data available for plots.

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